RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 MSL3Q8N5Y2 521 aaKnown RBP12.03□□□□□ -0.48
VPS33A-204ENST00000540669 TMEM87AQ8NBN3 555 aa12.03□□□□□ -0.48
VPS33A-204ENST00000540669 TNPO1Q92973 898 aaKnown RBP12.03□□□□□ -0.48
VPS33A-204ENST00000540669 USP28Q96RU2 1077 aa12.03□□□□□ -0.48
VPS33A-204ENST00000540669 IWS1Q96ST2 819 aa12.03□□□□□ -0.48
VPS33A-204ENST00000540669 ARHGAP39Q9C0H5 1083 aa12.03□□□□□ -0.48
VPS33A-204ENST00000540669 KCNMB3Q9NPA1 279 aa12.03□□□□□ -0.48
VPS33A-204ENST00000540669 UBIAD1Q9Y5Z9 338 aa12.03□□□□□ -0.48
VPS33A-204ENST00000540669 DOCK5Q9H7D0 1870 aa12.02□□□□□ -0.48
VPS33A-204ENST00000540669 FAM86B1E9PN63 330 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 POTEB2H3BUK9 544 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 MEIS1O00470 390 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 TDP2O95551 362 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 FAM86B2P0C5J1 330 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 XRCC5P13010 732 aaKnown RBP12.02□□□□□ -0.49
VPS33A-204ENST00000540669 ATP2C1P98194 919 aaPredicted RBP12.02□□□□□ -0.49
VPS33A-204ENST00000540669 MAP2K5Q13163 448 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 SEMA3FQ13275 785 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 Q4G0T1 1027 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 OLFML2BQ68BL8 750 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 B3GNT9Q6UX72 402 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 CTU1Q7Z7A3 348 aaKnown RBP12.02□□□□□ -0.49
VPS33A-204ENST00000540669 CCAR1Q8IX12 1150 aaKnown RBP12.02□□□□□ -0.49
VPS33A-204ENST00000540669 ANKRD35Q8N283 1001 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 NSUN6Q8TEA1 469 aaKnown RBP12.02□□□□□ -0.49
VPS33A-204ENST00000540669 MAML3Q96JK9 1138 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 CHAMP1Q96JM3 812 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 RMDN3Q96TC7 470 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 APBA2Q99767 749 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 FTOQ9C0B1 505 aaKnown RBP eCLIP12.02□□□□□ -0.49
VPS33A-204ENST00000540669 RTEL1Q9NZ71 1219 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 PCDHB6Q9Y5E3 794 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 ELP1O95163 1332 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 SYNGAP1Q96PV0 1343 aa12.02□□□□□ -0.49
VPS33A-204ENST00000540669 SLC37A4O43826 429 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 STAM2O75886 525 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 YEATS4O95619 227 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 GNRH1P01148 92 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 PGK2P07205 417 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 NR3C2P08235 984 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 ITGB5P18084 799 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 HOXD10P28358 340 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 ICAM3P32942 547 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 FCGRTP55899 365 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 DNM1Q05193 864 aaKnown RBP12.01□□□□□ -0.49
VPS33A-204ENST00000540669 NBR1Q14596 966 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 TTC38Q5R3I4 469 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 MCTP1Q6DN14 999 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 LINC00301Q8NCQ3 95 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 NPLOC4Q8TAT6 608 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 ETNPPLQ8TBG4 499 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 ZNF296Q8WUU4 475 aaPredicted RBP12.01□□□□□ -0.49
VPS33A-204ENST00000540669 MTMR9Q96QG7 549 aa12.01□□□□□ -0.49
VPS33A-204ENST00000540669 ADD3Q9UEY8 706 aaKnown RBP12.01□□□□□ -0.49
VPS33A-204ENST00000540669 RBM47A0AV96 593 aaKnown RBP12□□□□□ -0.49
VPS33A-204ENST00000540669 TNPO2O14787 897 aaKnown RBP12□□□□□ -0.49
VPS33A-204ENST00000540669 TBX3O15119 743 aa12□□□□□ -0.49
VPS33A-204ENST00000540669 PRPHP41219 470 aa12□□□□□ -0.49
VPS33A-204ENST00000540669 SPIRE1Q08AE8 756 aa12□□□□□ -0.49
VPS33A-204ENST00000540669 CEP55Q53EZ4 464 aa12□□□□□ -0.49
VPS33A-204ENST00000540669 ANO1Q5XXA6 986 aa12□□□□□ -0.49
VPS33A-204ENST00000540669 FCHSD1Q86WN1 690 aa12□□□□□ -0.49
VPS33A-204ENST00000540669 GPRASP2Q96D09 838 aa12□□□□□ -0.49
VPS33A-204ENST00000540669 NAP1L4Q99733 375 aaKnown RBP12□□□□□ -0.49
VPS33A-204ENST00000540669 TMEM60Q9H2L4 133 aa12□□□□□ -0.49
VPS33A-204ENST00000540669 EHMT1Q9H9B1 1298 aa12□□□□□ -0.49
VPS33A-204ENST00000540669 RCOR1Q9UKL0 485 aa12□□□□□ -0.49
VPS33A-204ENST00000540669 NOL7Q9UMY1 257 aaKnown RBP12□□□□□ -0.49
VPS33A-204ENST00000540669 ATP6V1DQ9Y5K8 247 aa12□□□□□ -0.49
VPS33A-204ENST00000540669 IVNS1ABPQ9Y6Y0 642 aa12□□□□□ -0.49
VPS33A-204ENST00000540669 BAG4O95429 457 aaKnown RBP11.99□□□□□ -0.49
VPS33A-204ENST00000540669 SNAI1O95863 264 aaPredicted RBP11.99□□□□□ -0.49
VPS33A-204ENST00000540669 BMP15O95972 392 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 PRR29P0C7W0 189 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 EIF2AK2P19525 551 aaKnown RBP11.99□□□□□ -0.49
VPS33A-204ENST00000540669 RGS2P41220 211 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 PSMC4P43686 418 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 SETQ01105 290 aaPredicted RBP11.99□□□□□ -0.49
VPS33A-204ENST00000540669 SLC39A14Q15043 492 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 COL13A1Q5TAT6 717 aaPredicted RBP11.99□□□□□ -0.49
VPS33A-204ENST00000540669 CHRDL2Q6WN34 429 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 CYP2W1Q8TAV3 490 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 CD99L2Q8TCZ2 262 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 LEO1Q8WVC0 666 aaPredicted RBP11.99□□□□□ -0.49
VPS33A-204ENST00000540669 HAS1Q92839 578 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 NUDT12Q9BQG2 462 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 MXRA8Q9BRK3 442 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 JADE2Q9NQC1 790 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 FLRT1Q9NZU1 646 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 SRRDQ9UH36 339 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 TRIM17Q9Y577 477 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 CLIC4Q9Y696 253 aa11.99□□□□□ -0.49
VPS33A-204ENST00000540669 DDX49Q9Y6V7 483 aaKnown RBP11.99□□□□□ -0.49
VPS33A-204ENST00000540669 LAD1O00515 517 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 DHX15O43143 795 aaKnown RBP11.98□□□□□ -0.49
VPS33A-204ENST00000540669 NEMFO60524 1076 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 CCND2P30279 289 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 PRMT2P55345 433 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 KRT85P78386 507 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 PRKCZQ05513 592 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms