RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 IWS1Q96ST2 819 aa12.34□□□□□ -0.43
HMGA2-209ENST00000539662 MAF1Q9H063 256 aa12.34□□□□□ -0.43
HMGA2-209ENST00000539662 PSTPIP2Q9H939 334 aa12.34□□□□□ -0.43
HMGA2-209ENST00000539662 RTEL1Q9NZ71 1219 aa12.34□□□□□ -0.43
HMGA2-209ENST00000539662 ATP11BQ9Y2G3 1177 aa12.34□□□□□ -0.43
HMGA2-209ENST00000539662 GTF3C3Q9Y5Q9 886 aa12.34□□□□□ -0.43
HMGA2-209ENST00000539662 GRIN2DO15399 1336 aa12.34□□□□□ -0.43
HMGA2-209ENST00000539662 FRMPD4Q14CM0 1322 aa12.34□□□□□ -0.43
HMGA2-209ENST00000539662 PIK3CDO00329 1044 aa12.33□□□□□ -0.44
HMGA2-209ENST00000539662 PRPF3O43395 683 aaKnown RBP12.33□□□□□ -0.44
HMGA2-209ENST00000539662 EIF3JO75822 258 aaKnown RBP12.33□□□□□ -0.44
HMGA2-209ENST00000539662 NAPAP54920 295 aa12.33□□□□□ -0.44
HMGA2-209ENST00000539662 ARHGAP1Q07960 439 aa12.33□□□□□ -0.44
HMGA2-209ENST00000539662 SCRN1Q12765 414 aa12.33□□□□□ -0.44
HMGA2-209ENST00000539662 SEMA3FQ13275 785 aa12.33□□□□□ -0.44
HMGA2-209ENST00000539662 PPP2R5BQ15173 497 aa12.33□□□□□ -0.44
HMGA2-209ENST00000539662 PFKFB3Q16875 520 aaPredicted RBP12.33□□□□□ -0.44
HMGA2-209ENST00000539662 OR6J1Q8NGC5 347 aa12.33□□□□□ -0.44
HMGA2-209ENST00000539662 SCFD2Q8WU76 684 aa12.33□□□□□ -0.44
HMGA2-209ENST00000539662 AIFM3Q96NN9 605 aa12.33□□□□□ -0.44
HMGA2-209ENST00000539662 TSEN34Q9BSV6 310 aaKnown RBP12.33□□□□□ -0.44
HMGA2-209ENST00000539662 SLC26A6Q9BXS9 759 aa12.33□□□□□ -0.44
HMGA2-209ENST00000539662 MAP3K20Q9NYL2 800 aaKnown RBP12.33□□□□□ -0.44
HMGA2-209ENST00000539662 DDX41Q9UJV9 622 aaKnown RBP12.33□□□□□ -0.44
HMGA2-209ENST00000539662 SMCO2A6NFE2 343 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 CTDNEP1O95476 244 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 IFNAR1P17181 557 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 ITGB8P26012 769 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 TLE2Q04725 743 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 ST3GAL1Q11201 340 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 TRAF1Q13077 416 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 SAMD3Q8N6K7 520 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 NECAB1Q8N987 351 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 ZNF274Q96GC6 653 aaPredicted RBP12.32□□□□□ -0.44
HMGA2-209ENST00000539662 AP5M1Q9H0R1 490 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 ALDH8A1Q9H2A2 487 aaPredicted RBP12.32□□□□□ -0.44
HMGA2-209ENST00000539662 STARD7Q9NQZ5 370 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 BARHL2Q9NY43 387 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 PCDHA6Q9UN73 950 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 COLQQ9Y215 455 aaPredicted RBP12.32□□□□□ -0.44
HMGA2-209ENST00000539662 Q9Y3F1 56 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 PCDHA8Q9Y5H6 950 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 LTBP2Q14767 1821 aa12.32□□□□□ -0.44
HMGA2-209ENST00000539662 TRIM43BA6NCK2 446 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 MOXD2PA6NHM9 499 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 PQBP1O60828 265 aaKnown RBP12.31□□□□□ -0.44
HMGA2-209ENST00000539662 MYL3P08590 195 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 SCG2P13521 617 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 CCND2P30279 289 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 CDK7P50613 346 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 NEK4P51957 841 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 TTLL4Q14679 1199 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 ME3Q16798 604 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 CHRDL2Q6WN34 429 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 PCSK9Q8NBP7 692 aaKnown RBP12.31□□□□□ -0.44
HMGA2-209ENST00000539662 RASGRP4Q8TDF6 673 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 AFG1LQ8WV93 481 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 CUL5Q93034 780 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 TRIM43Q96BQ3 446 aaPredicted RBP12.31□□□□□ -0.44
HMGA2-209ENST00000539662 MPHOSPH6Q99547 160 aaKnown RBP12.31□□□□□ -0.44
HMGA2-209ENST00000539662 SPC25Q9HBM1 224 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 RIC8AQ9NPQ8 531 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 VPS54Q9P1Q0 977 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 NR2E3Q9Y5X4 410 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 MRVI1Q9Y6F6 885 aa12.31□□□□□ -0.44
HMGA2-209ENST00000539662 CCDC196A0A1B0GTZ2 297 aa12.3□□□□□ -0.44
HMGA2-209ENST00000539662 A6NJR5 290 aa12.3□□□□□ -0.44
HMGA2-209ENST00000539662 B4DLN1 442 aa12.3□□□□□ -0.44
HMGA2-209ENST00000539662 PFKFB2O60825 505 aa12.3□□□□□ -0.44
HMGA2-209ENST00000539662 ITGB5P18084 799 aa12.3□□□□□ -0.44
HMGA2-209ENST00000539662 UBA1P22314 1058 aaKnown RBP12.3□□□□□ -0.44
HMGA2-209ENST00000539662 CLK2P49760 499 aaKnown RBP12.3□□□□□ -0.44
HMGA2-209ENST00000539662 ADCY7P51828 1080 aa12.3□□□□□ -0.44
HMGA2-209ENST00000539662 MRPL12P52815 198 aaKnown RBP12.3□□□□□ -0.44
HMGA2-209ENST00000539662 PURAQ00577 322 aaKnown RBP12.3□□□□□ -0.44
HMGA2-209ENST00000539662 C1orf53Q5VUE5 145 aa12.3□□□□□ -0.44
HMGA2-209ENST00000539662 JAKMIP3Q5VZ66 844 aa12.3□□□□□ -0.44
HMGA2-209ENST00000539662 CYP2W1Q8TAV3 490 aa12.3□□□□□ -0.44
HMGA2-209ENST00000539662 VTI1AQ96AJ9 217 aa12.3□□□□□ -0.44
HMGA2-209ENST00000539662 GLT1D1Q96MS3 346 aa12.3□□□□□ -0.44
HMGA2-209ENST00000539662 PRO3102Q9H379 93 aa12.3□□□□□ -0.44
HMGA2-209ENST00000539662 PDLIM7Q9NR12 457 aa12.3□□□□□ -0.44
HMGA2-209ENST00000539662 GJB4Q9NTQ9 266 aa12.3□□□□□ -0.44
HMGA2-209ENST00000539662 SPATA31C2B4DYI2 1134 aa12.29□□□□□ -0.44
HMGA2-209ENST00000539662 EDIL3O43854 480 aa12.29□□□□□ -0.44
HMGA2-209ENST00000539662 ATP9AO75110 1047 aa12.29□□□□□ -0.44
HMGA2-209ENST00000539662 GH1P01241 217 aa12.29□□□□□ -0.44
HMGA2-209ENST00000539662 MMP3P08254 477 aa12.29□□□□□ -0.44
HMGA2-209ENST00000539662 MAGEA10P43363 369 aaPredicted RBP12.29□□□□□ -0.44
HMGA2-209ENST00000539662 MDM2Q00987 491 aaPredicted RBP12.29□□□□□ -0.44
HMGA2-209ENST00000539662 FAAP100Q0VG06 881 aa12.29□□□□□ -0.44
HMGA2-209ENST00000539662 MYSM1Q5VVJ2 828 aa12.29□□□□□ -0.44
HMGA2-209ENST00000539662 PCNX4Q63HM2 1172 aa12.29□□□□□ -0.44
HMGA2-209ENST00000539662 PPP1R18Q6NYC8 613 aa12.29□□□□□ -0.44
HMGA2-209ENST00000539662 KAT2BQ92831 832 aa12.29□□□□□ -0.44
HMGA2-209ENST00000539662 INPP4AQ96PE3 977 aaPredicted RBP12.29□□□□□ -0.44
HMGA2-209ENST00000539662 UIMC1Q96RL1 719 aa12.29□□□□□ -0.44
HMGA2-209ENST00000539662 RNF26Q9BY78 433 aaPredicted RBP12.29□□□□□ -0.44
HMGA2-209ENST00000539662 C22orf23Q9BZE7 217 aa12.29□□□□□ -0.44
HMGA2-209ENST00000539662 PRDM5Q9NQX1 630 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms