RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 KAT14Q9H8E8 782 aa15.87■□□□□ 0.13
SS18-204ENST00000539244 RFXAPO00287 272 aa15.86■□□□□ 0.13
SS18-204ENST00000539244 KDM4AO75164 1064 aa15.86■□□□□ 0.13
SS18-204ENST00000539244 ARHGEF15O94989 841 aa15.86■□□□□ 0.13
SS18-204ENST00000539244 CASTP20810 708 aaKnown RBP15.86■□□□□ 0.13
SS18-204ENST00000539244 GHRHRQ02643 423 aa15.86■□□□□ 0.13
SS18-204ENST00000539244 QRICH1Q2TAL8 776 aa15.86■□□□□ 0.13
SS18-204ENST00000539244 GDF6Q6KF10 455 aaPredicted RBP15.86■□□□□ 0.13
SS18-204ENST00000539244 SEPT14Q6ZU15 432 aa15.86■□□□□ 0.13
SS18-204ENST00000539244 MICALL1Q8N3F8 863 aa15.86■□□□□ 0.13
SS18-204ENST00000539244 ENAHQ8N8S7 591 aaPredicted RBP15.86■□□□□ 0.13
SS18-204ENST00000539244 ZSCAN10Q96SZ4 725 aaPredicted RBP15.86■□□□□ 0.13
SS18-204ENST00000539244 RMDN3Q96TC7 470 aa15.86■□□□□ 0.13
SS18-204ENST00000539244 GTF2IRD1Q9UHL9 959 aa15.86■□□□□ 0.13
SS18-204ENST00000539244 DDX41Q9UJV9 622 aaKnown RBP15.86■□□□□ 0.13
SS18-204ENST00000539244 MRPL11Q9Y3B7 192 aaKnown RBP15.86■□□□□ 0.13
SS18-204ENST00000539244 CXCL10P02778 98 aa15.85■□□□□ 0.13
SS18-204ENST00000539244 SELPP16109 830 aa15.85■□□□□ 0.13
SS18-204ENST00000539244 TFF2Q03403 129 aa15.85■□□□□ 0.13
SS18-204ENST00000539244 DGKDQ16760 1214 aa15.85■□□□□ 0.13
SS18-204ENST00000539244 FBXO11Q86XK2 927 aa15.85■□□□□ 0.13
SS18-204ENST00000539244 PLEKHM2Q8IWE5 1019 aa15.85■□□□□ 0.13
SS18-204ENST00000539244 DHX38Q92620 1227 aaKnown RBP15.85■□□□□ 0.13
SS18-204ENST00000539244 DSCC1Q9BVC3 393 aa15.85■□□□□ 0.13
SS18-204ENST00000539244 JMJD4Q9H9V9 463 aa15.85■□□□□ 0.13
SS18-204ENST00000539244 CERS4Q9HA82 394 aa15.85■□□□□ 0.13
SS18-204ENST00000539244 COG5Q9UP83 839 aa15.85■□□□□ 0.13
SS18-204ENST00000539244 BDP1A6H8Y1 2624 aa15.85■□□□□ 0.13
SS18-204ENST00000539244 B4E1Z4 1266 aa15.84■□□□□ 0.13
SS18-204ENST00000539244 HAS3O00219 553 aa15.84■□□□□ 0.13
SS18-204ENST00000539244 EIF3JO75822 258 aaKnown RBP15.84■□□□□ 0.13
SS18-204ENST00000539244 PARP1P09874 1014 aaKnown RBP15.84■□□□□ 0.13
SS18-204ENST00000539244 HOXD8P13378 290 aaPredicted RBP15.84■□□□□ 0.13
SS18-204ENST00000539244 KCNJ6P48051 423 aa15.84■□□□□ 0.13
SS18-204ENST00000539244 HSD17B4P51659 736 aa15.84■□□□□ 0.13
SS18-204ENST00000539244 WDR5P61964 334 aaKnown RBP15.84■□□□□ 0.13
SS18-204ENST00000539244 CNKSR3Q6P9H4 555 aa15.84■□□□□ 0.13
SS18-204ENST00000539244 CWC27Q6UX04 472 aaKnown RBP15.84■□□□□ 0.13
SS18-204ENST00000539244 LRRC8DQ7L1W4 858 aa15.84■□□□□ 0.13
SS18-204ENST00000539244 PPTC7Q8NI37 304 aa15.84■□□□□ 0.13
SS18-204ENST00000539244 ARNTL2Q8WYA1 636 aa15.84■□□□□ 0.13
SS18-204ENST00000539244 KATNAL1Q9BW62 490 aa15.84■□□□□ 0.13
SS18-204ENST00000539244 PXMP2Q9NR77 195 aa15.84■□□□□ 0.13
SS18-204ENST00000539244 MAP3K20Q9NYL2 800 aaKnown RBP15.84■□□□□ 0.13
SS18-204ENST00000539244 ZSWIM5Q9P217 1185 aa15.84■□□□□ 0.13
SS18-204ENST00000539244 HIP1O00291 1037 aa15.83■□□□□ 0.12
SS18-204ENST00000539244 OPLAHO14841 1288 aa15.83■□□□□ 0.12
SS18-204ENST00000539244 TLL1O43897 1013 aa15.83■□□□□ 0.12
SS18-204ENST00000539244 LPXNO60711 386 aa15.83■□□□□ 0.12
SS18-204ENST00000539244 F2P00734 622 aa15.83■□□□□ 0.12
SS18-204ENST00000539244 NR3C2P08235 984 aa15.83■□□□□ 0.12
SS18-204ENST00000539244 CKBP12277 381 aa15.83■□□□□ 0.12
SS18-204ENST00000539244 KCNQ1P51787 676 aa15.83■□□□□ 0.12
SS18-204ENST00000539244 LAMC2Q13753 1193 aa15.83■□□□□ 0.12
SS18-204ENST00000539244 SKIV2LQ15477 1246 aaKnown RBP15.83■□□□□ 0.12
SS18-204ENST00000539244 ARHGEF16Q5VV41 709 aa15.83■□□□□ 0.12
SS18-204ENST00000539244 CHST3Q7LGC8 479 aa15.83■□□□□ 0.12
SS18-204ENST00000539244 CHD1LQ86WJ1 897 aa15.83■□□□□ 0.12
SS18-204ENST00000539244 MTMR8Q96EF0 704 aa15.83■□□□□ 0.12
SS18-204ENST00000539244 NECAB3Q96P71 396 aaPredicted RBP15.83■□□□□ 0.12
SS18-204ENST00000539244 HDAC6Q9UBN7 1215 aa15.83■□□□□ 0.12
SS18-204ENST00000539244 MYH7BA7E2Y1 1941 aa15.83■□□□□ 0.12
SS18-204ENST00000539244 COL4A4P53420 1690 aaPredicted RBP15.83■□□□□ 0.12
SS18-204ENST00000539244 ABHD14A-ACY1A0A1B0GW23 586 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 NBNO60934 754 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 EIF2AK2P19525 551 aaKnown RBP15.82■□□□□ 0.12
SS18-204ENST00000539244 PSEN2P49810 448 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 CHMP4BP1P59074 171 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 NUCB1Q02818 461 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 PTK7Q13308 1070 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 GRB10Q13322 594 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 IMMTQ16891 758 aaKnown RBP15.82■□□□□ 0.12
SS18-204ENST00000539244 TRIM71Q2Q1W2 868 aaKnown RBP15.82■□□□□ 0.12
SS18-204ENST00000539244 KRT40Q6A162 431 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 TRAF7Q6Q0C0 670 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 SAMD3Q8N6K7 520 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 C7orf31Q8N865 590 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 AMNQ9BXJ7 453 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 KRT23Q9C075 422 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 RWDD1Q9H446 243 aaPredicted RBP15.82■□□□□ 0.12
SS18-204ENST00000539244 CNNM2Q9H8M5 875 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 DIAPH3Q9NSV4 1193 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 LMCD1Q9NZU5 365 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 CTNNA3Q9UI47 895 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 MRVI1Q9Y6F6 885 aa15.82■□□□□ 0.12
SS18-204ENST00000539244 LCHNA4D1U4 455 aa15.81■□□□□ 0.12
SS18-204ENST00000539244 EFCAB14O75071 495 aa15.81■□□□□ 0.12
SS18-204ENST00000539244 RGS20O76081 388 aa15.81■□□□□ 0.12
SS18-204ENST00000539244 GJB5O95377 273 aa15.81■□□□□ 0.12
SS18-204ENST00000539244 DEFB103AP81534 67 aa15.81■□□□□ 0.12
SS18-204ENST00000539244 MFSD10Q14728 455 aa15.81■□□□□ 0.12
SS18-204ENST00000539244 KIAA0753Q2KHM9 967 aa15.81■□□□□ 0.12
SS18-204ENST00000539244 KCNV1Q6PIU1 500 aa15.81■□□□□ 0.12
SS18-204ENST00000539244 STOX1Q6ZVD7 989 aa15.81■□□□□ 0.12
SS18-204ENST00000539244 SPRED2Q7Z698 418 aa15.81■□□□□ 0.12
SS18-204ENST00000539244 STAG2Q8N3U4 1231 aa15.81■□□□□ 0.12
SS18-204ENST00000539244 PDCD2LQ9BRP1 358 aa15.81■□□□□ 0.12
SS18-204ENST00000539244 DHX16O60231 1041 aaKnown RBP15.8■□□□□ 0.12
SS18-204ENST00000539244 PPFIA4O75335 1185 aa15.8■□□□□ 0.12
SS18-204ENST00000539244 CFBP00751 764 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms