RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 PGM5Q15124 567 aa13.35□□□□□ -0.27
RTN3-209ENST00000538995 MFSD5Q6N075 450 aa13.35□□□□□ -0.27
RTN3-209ENST00000538995 VSIG10LQ86VR7 867 aa13.35□□□□□ -0.27
RTN3-209ENST00000538995 MICU3Q86XE3 530 aa13.35□□□□□ -0.27
RTN3-209ENST00000538995 TEX2Q8IWB9 1127 aa13.35□□□□□ -0.27
RTN3-209ENST00000538995 SRBD1Q8N5C6 995 aaKnown RBP13.35□□□□□ -0.27
RTN3-209ENST00000538995 LRCH3Q96II8 777 aa13.35□□□□□ -0.27
RTN3-209ENST00000538995 LRRC2Q9BYS8 371 aa13.35□□□□□ -0.27
RTN3-209ENST00000538995 RBM28Q9NW13 759 aaKnown RBP13.35□□□□□ -0.27
RTN3-209ENST00000538995 MRVI1Q9Y6F6 885 aa13.35□□□□□ -0.27
RTN3-209ENST00000538995 SUPT20HL2P0C7V6 817 aa13.34□□□□□ -0.27
RTN3-209ENST00000538995 TGFB3P10600 412 aa13.34□□□□□ -0.27
RTN3-209ENST00000538995 RXRAP19793 462 aa13.34□□□□□ -0.27
RTN3-209ENST00000538995 HSPA4P34932 840 aa13.34□□□□□ -0.27
RTN3-209ENST00000538995 PSMC6P62333 389 aa13.34□□□□□ -0.27
RTN3-209ENST00000538995 PTPN11Q06124 597 aaPredicted RBP13.34□□□□□ -0.27
RTN3-209ENST00000538995 PPIGQ13427 754 aaKnown RBP eCLIP13.34□□□□□ -0.27
RTN3-209ENST00000538995 ADCK5Q3MIX3 580 aa13.34□□□□□ -0.27
RTN3-209ENST00000538995 NFRKBQ6P4R8 1299 aa13.34□□□□□ -0.27
RTN3-209ENST00000538995 COPS5Q92905 334 aa13.34□□□□□ -0.27
RTN3-209ENST00000538995 CUL5Q93034 780 aa13.34□□□□□ -0.27
RTN3-209ENST00000538995 ALDH8A1Q9H2A2 487 aaPredicted RBP13.34□□□□□ -0.27
RTN3-209ENST00000538995 PPP4R2Q9NY27 417 aa13.34□□□□□ -0.27
RTN3-209ENST00000538995 DDX41Q9UJV9 622 aaKnown RBP13.34□□□□□ -0.27
RTN3-209ENST00000538995 ZBTB43O43298 467 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 B4GALT4O60513 344 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 RGS20O76081 388 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 MMP3P08254 477 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 LAMC2Q13753 1193 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 SHHQ15465 462 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 LY6KQ17RY6 165 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 GNPTABQ3T906 1256 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 C9orf50Q5SZB4 431 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 XRRA1Q6P2D8 792 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 FCHSD1Q86WN1 690 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 TMEM199Q8N511 208 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 IL31RAQ8NI17 732 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 PPTC7Q8NI37 304 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 AFG1LQ8WV93 481 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 PIBF1Q8WXW3 757 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 HIPK3Q9H422 1215 aa13.33□□□□□ -0.28
RTN3-209ENST00000538995 SCN10AQ9Y5Y9 1956 aa13.32□□□□□ -0.28
RTN3-209ENST00000538995 BAZ2BQ9UIF8 2168 aaKnown RBP13.32□□□□□ -0.28
RTN3-209ENST00000538995 LAMA2P24043 3122 aaKnown RBP13.32□□□□□ -0.28
RTN3-209ENST00000538995 hCG_1984214I3L0E3 225 aa13.32□□□□□ -0.28
RTN3-209ENST00000538995 MEIS2O14770 477 aa13.32□□□□□ -0.28
RTN3-209ENST00000538995 MYCLP12524 364 aaPredicted RBP13.32□□□□□ -0.28
RTN3-209ENST00000538995 HOXD8P13378 290 aaPredicted RBP13.32□□□□□ -0.28
RTN3-209ENST00000538995 CASTP20810 708 aaKnown RBP13.32□□□□□ -0.28
RTN3-209ENST00000538995 DGKDQ16760 1214 aa13.32□□□□□ -0.28
RTN3-209ENST00000538995 RTN1Q16799 776 aa13.32□□□□□ -0.28
RTN3-209ENST00000538995 FAM109BQ6ICB4 259 aaPredicted RBP13.32□□□□□ -0.28
RTN3-209ENST00000538995 PPP1R18Q6NYC8 613 aa13.32□□□□□ -0.28
RTN3-209ENST00000538995 FBXL16Q8N461 479 aa13.32□□□□□ -0.28
RTN3-209ENST00000538995 ZNF713Q8N859 430 aaPredicted RBP13.32□□□□□ -0.28
RTN3-209ENST00000538995 SMARCC2Q8TAQ2 1214 aa13.32□□□□□ -0.28
RTN3-209ENST00000538995 RNPC3Q96LT9 517 aaKnown RBP13.32□□□□□ -0.28
RTN3-209ENST00000538995 INPP4AQ96PE3 977 aaPredicted RBP13.32□□□□□ -0.28
RTN3-209ENST00000538995 NOC4LQ9BVI4 516 aaKnown RBP13.32□□□□□ -0.28
RTN3-209ENST00000538995 BRPF3Q9ULD4 1205 aa13.32□□□□□ -0.28
RTN3-209ENST00000538995 CNTNAP5Q8WYK1 1306 aa13.32□□□□□ -0.28
RTN3-209ENST00000538995 KLF18A0A0U1RQI7 1052 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 GOLGA8AA7E2F4 631 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 GOLGA8BA8MQT2 603 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 CENPBP07199 599 aaPredicted RBP13.31□□□□□ -0.28
RTN3-209ENST00000538995 UBA1P22314 1058 aaKnown RBP13.31□□□□□ -0.28
RTN3-209ENST00000538995 PSMA5P28066 241 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 ICAM3P32942 547 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 EPHB4P54760 987 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 SMAD3P84022 425 aaKnown RBP13.31□□□□□ -0.28
RTN3-209ENST00000538995 FGD1P98174 961 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 NBPF20Q3BBV1 942 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 PCNX4Q63HM2 1172 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 PSRC1Q6PGN9 363 aaPredicted RBP13.31□□□□□ -0.28
RTN3-209ENST00000538995 BLOC1S2Q6QNY1 142 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 SESTD1Q86VW0 696 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 RAB11FIP4Q86YS3 637 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 DHX37Q8IY37 1157 aaKnown RBP13.31□□□□□ -0.28
RTN3-209ENST00000538995 CMTR1Q8N1G2 835 aaKnown RBP13.31□□□□□ -0.28
RTN3-209ENST00000538995 TCEANC2Q96MN5 208 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 JAKMIP1Q96N16 626 aaKnown RBP13.31□□□□□ -0.28
RTN3-209ENST00000538995 KATNAL1Q9BW62 490 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 PPP1R12CQ9BZL4 782 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 TRPV6Q9H1D0 765 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 PSTPIP2Q9H939 334 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 SNX14Q9Y5W7 946 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 NID2Q14112 1375 aa13.31□□□□□ -0.28
RTN3-209ENST00000538995 CCDC196A0A1B0GTZ2 297 aa13.3□□□□□ -0.28
RTN3-209ENST00000538995 FIBPO43427 364 aa13.3□□□□□ -0.28
RTN3-209ENST00000538995 F2P00734 622 aa13.3□□□□□ -0.28
RTN3-209ENST00000538995 CSF2RAP15509 400 aa13.3□□□□□ -0.28
RTN3-209ENST00000538995 FUT2Q10981 343 aa13.3□□□□□ -0.28
RTN3-209ENST00000538995 CELF3Q5SZQ8 465 aaKnown RBP13.3□□□□□ -0.28
RTN3-209ENST00000538995 MYSM1Q5VVJ2 828 aa13.3□□□□□ -0.28
RTN3-209ENST00000538995 USP17L6PQ6QN14 398 aa13.3□□□□□ -0.28
RTN3-209ENST00000538995 HEATR3Q7Z4Q2 680 aa13.3□□□□□ -0.28
RTN3-209ENST00000538995 AGXT2Q9BYV1 514 aa13.3□□□□□ -0.28
RTN3-209ENST00000538995 TRMT13Q9NUP7 481 aaKnown RBP13.3□□□□□ -0.28
RTN3-209ENST00000538995 KIAA1217Q5T5P2 1943 aa13.3□□□□□ -0.28
RTN3-209ENST00000538995 PITPNM1O00562 1244 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms