RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 SPATA32Q96LK8 384 aa7.64□□□□□ -1.19
SYNE1-232ENST00000535081 SCAND2PQ9GZW5 306 aaPredicted RBP7.64□□□□□ -1.19
SYNE1-232ENST00000535081 GPRC5CQ9NQ84 441 aa7.64□□□□□ -1.19
SYNE1-232ENST00000535081 BTG4Q9NY30 223 aa7.64□□□□□ -1.19
SYNE1-232ENST00000535081 APEX2Q9UBZ4 518 aa7.64□□□□□ -1.19
SYNE1-232ENST00000535081 ANKRD34BA5PLL1 514 aa7.63□□□□□ -1.19
SYNE1-232ENST00000535081 C9orf118A6NHY6 69 aa7.63□□□□□ -1.19
SYNE1-232ENST00000535081 C22orf46C9J442 243 aa7.63□□□□□ -1.19
SYNE1-232ENST00000535081 LAMTOR5O43504 91 aa7.63□□□□□ -1.19
SYNE1-232ENST00000535081 KCNH1O95259 989 aa7.63□□□□□ -1.19
SYNE1-232ENST00000535081 TACR2P21452 398 aa7.63□□□□□ -1.19
SYNE1-232ENST00000535081 SLC6A11P48066 632 aa7.63□□□□□ -1.19
SYNE1-232ENST00000535081 SH3RF3Q8TEJ3 882 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-232ENST00000535081 EMC9Q9Y3B6 208 aa7.63□□□□□ -1.19
SYNE1-232ENST00000535081 B4GALT3O60512 393 aa7.62□□□□□ -1.19
SYNE1-232ENST00000535081 GDF5P43026 501 aa7.62□□□□□ -1.19
SYNE1-232ENST00000535081 SURF1Q15526 300 aa7.62□□□□□ -1.19
SYNE1-232ENST00000535081 KIAA1211LQ6NV74 962 aa7.62□□□□□ -1.19
SYNE1-232ENST00000535081 SPRED1Q7Z699 444 aa7.62□□□□□ -1.19
SYNE1-232ENST00000535081 MILR1Q7Z6M3 343 aa7.62□□□□□ -1.19
SYNE1-232ENST00000535081 CRACR2BQ8N4Y2 399 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-232ENST00000535081 NGRNQ9NPE2 291 aaKnown RBP7.62□□□□□ -1.19
SYNE1-232ENST00000535081 TSC22D4Q9Y3Q8 395 aa7.62□□□□□ -1.19
SYNE1-232ENST00000535081 ZNF28P17035 718 aa7.61□□□□□ -1.19
SYNE1-232ENST00000535081 STAT5AP42229 794 aa7.61□□□□□ -1.19
SYNE1-232ENST00000535081 CDSNQ15517 529 aa7.61□□□□□ -1.19
SYNE1-232ENST00000535081 PPP2R5EQ16537 467 aa7.61□□□□□ -1.19
SYNE1-232ENST00000535081 INF2Q27J81 1249 aa7.61□□□□□ -1.19
SYNE1-232ENST00000535081 PRAMEF18Q5VWM3 479 aa7.61□□□□□ -1.19
SYNE1-232ENST00000535081 POMZP3Q6PJE2 187 aa7.61□□□□□ -1.19
SYNE1-232ENST00000535081 PLEKHH3Q7Z736 793 aa7.61□□□□□ -1.19
SYNE1-232ENST00000535081 ZNF654Q8IZM8 581 aa7.61□□□□□ -1.19
SYNE1-232ENST00000535081 PPP4R1LQ9P1A2 415 aa7.61□□□□□ -1.19
SYNE1-232ENST00000535081 FPR2P25090 351 aa7.6□□□□□ -1.19
SYNE1-232ENST00000535081 ADAM9Q13443 819 aa7.6□□□□□ -1.19
SYNE1-232ENST00000535081 CR1LQ2VPA4 569 aa7.6□□□□□ -1.19
SYNE1-232ENST00000535081 MROH9Q5TGP6 573 aa7.6□□□□□ -1.19
SYNE1-232ENST00000535081 VHLLQ6RSH7 139 aa7.6□□□□□ -1.19
SYNE1-232ENST00000535081 RIOX2Q8IUF8 465 aa7.6□□□□□ -1.19
SYNE1-232ENST00000535081 Q8N1X5 172 aa7.6□□□□□ -1.19
SYNE1-232ENST00000535081 BVESQ8NE79 360 aa7.6□□□□□ -1.19
SYNE1-232ENST00000535081 HMGA2P52926 109 aa7.59□□□□□ -1.19
SYNE1-232ENST00000535081 NKX3-2P78367 333 aa7.59□□□□□ -1.19
SYNE1-232ENST00000535081 ICAM4Q14773 271 aa7.59□□□□□ -1.19
SYNE1-232ENST00000535081 CRIP3Q6Q6R5 217 aa7.59□□□□□ -1.19
SYNE1-232ENST00000535081 YIPF4Q9BSR8 244 aa7.59□□□□□ -1.19
SYNE1-232ENST00000535081 CYP1A1P04798 512 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-232ENST00000535081 RPL11P62913 178 aaKnown RBP7.58□□□□□ -1.2
SYNE1-232ENST00000535081 GTF2IRD2BQ6EKJ0 949 aa7.58□□□□□ -1.2
SYNE1-232ENST00000535081 GTF2IRD2Q86UP8 949 aa7.58□□□□□ -1.2
SYNE1-232ENST00000535081 Q8N1Y9 231 aa7.58□□□□□ -1.2
SYNE1-232ENST00000535081 RASGRP4Q8TDF6 673 aa7.58□□□□□ -1.2
SYNE1-232ENST00000535081 GPRASP2Q96D09 838 aa7.58□□□□□ -1.2
SYNE1-232ENST00000535081 SHDQ96IW2 340 aa7.58□□□□□ -1.2
SYNE1-232ENST00000535081 CDK5RAP1Q96SZ6 601 aaKnown RBP7.58□□□□□ -1.2
SYNE1-232ENST00000535081 APBA2Q99767 749 aa7.58□□□□□ -1.2
SYNE1-232ENST00000535081 KLC2Q9H0B6 622 aa7.58□□□□□ -1.2
SYNE1-232ENST00000535081 NOP56O00567 594 aaKnown RBP7.57□□□□□ -1.2
SYNE1-232ENST00000535081 SLPIP03973 132 aa7.57□□□□□ -1.2
SYNE1-232ENST00000535081 NAT2P11245 290 aa7.57□□□□□ -1.2
SYNE1-232ENST00000535081 CASP7P55210 303 aa7.57□□□□□ -1.2
SYNE1-232ENST00000535081 TRIM59Q8IWR1 403 aa7.57□□□□□ -1.2
SYNE1-232ENST00000535081 NPLOC4Q8TAT6 608 aa7.57□□□□□ -1.2
SYNE1-232ENST00000535081 FRS2Q8WU20 508 aa7.57□□□□□ -1.2
SYNE1-232ENST00000535081 MBD6Q96DN6 1003 aa7.57□□□□□ -1.2
SYNE1-232ENST00000535081 ZSWIM3Q96MP5 696 aa7.57□□□□□ -1.2
SYNE1-232ENST00000535081 YTHDC1Q96MU7 727 aaKnown RBP7.57□□□□□ -1.2
SYNE1-232ENST00000535081 NKX2-4Q9H2Z4 354 aa7.57□□□□□ -1.2
SYNE1-232ENST00000535081 CYP26B1Q9NR63 512 aa7.57□□□□□ -1.2
SYNE1-232ENST00000535081 X6R8D5 127 aa7.57□□□□□ -1.2
SYNE1-232ENST00000535081 NPEPPSL1A6NEC2 478 aa7.56□□□□□ -1.2
SYNE1-232ENST00000535081 CYR61O00622 381 aa7.56□□□□□ -1.2
SYNE1-232ENST00000535081 ZNF143P52747 638 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-232ENST00000535081 IQCEQ6IPM2 695 aa7.56□□□□□ -1.2
SYNE1-232ENST00000535081 NLRP10Q86W26 655 aa7.56□□□□□ -1.2
SYNE1-232ENST00000535081 TRMT2BQ96GJ1 504 aaKnown RBP7.56□□□□□ -1.2
SYNE1-232ENST00000535081 L2HGDHQ9H9P8 463 aa7.56□□□□□ -1.2
SYNE1-232ENST00000535081 CD248Q9HCU0 757 aa7.56□□□□□ -1.2
SYNE1-232ENST00000535081 ZNF652Q9Y2D9 606 aa7.56□□□□□ -1.2
SYNE1-232ENST00000535081 TIMM13Q9Y5L4 95 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-232ENST00000535081 GPR42O15529 346 aa7.55□□□□□ -1.2
SYNE1-232ENST00000535081 ACVRL1P37023 503 aa7.55□□□□□ -1.2
SYNE1-232ENST00000535081 CYP4F3Q08477 520 aa7.55□□□□□ -1.2
SYNE1-232ENST00000535081 E4F1Q66K89 784 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-232ENST00000535081 PKN3Q6P5Z2 889 aa7.55□□□□□ -1.2
SYNE1-232ENST00000535081 CEP68Q76N32 757 aa7.55□□□□□ -1.2
SYNE1-232ENST00000535081 CIR1Q86X95 450 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-232ENST00000535081 DNERQ8NFT8 737 aa7.55□□□□□ -1.2
SYNE1-232ENST00000535081 PPP1R14AQ96A00 147 aa7.55□□□□□ -1.2
SYNE1-232ENST00000535081 MRGPRX3Q96LB0 322 aa7.55□□□□□ -1.2
SYNE1-232ENST00000535081 CLIC6Q96NY7 704 aa7.55□□□□□ -1.2
SYNE1-232ENST00000535081 MRIQ9BWK5 157 aa7.55□□□□□ -1.2
SYNE1-232ENST00000535081 TMEM168Q9H0V1 697 aa7.55□□□□□ -1.2
SYNE1-232ENST00000535081 IL13P35225 146 aa7.54□□□□□ -1.2
SYNE1-232ENST00000535081 BCL6P41182 706 aa7.54□□□□□ -1.2
SYNE1-232ENST00000535081 GTF2A2P52657 109 aa7.54□□□□□ -1.2
SYNE1-232ENST00000535081 ZFPM1Q8IX07 1006 aa7.54□□□□□ -1.2
SYNE1-232ENST00000535081 VPS11Q9H270 941 aa7.54□□□□□ -1.2
SYNE1-232ENST00000535081 DTLQ9NZJ0 730 aa7.54□□□□□ -1.2
SYNE1-232ENST00000535081 OVOL3O00110 214 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms