RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	AMIGO3	Q86WK7	504 aa		4.27	□□□□□ -1.73
CD44-238	ENST00000534296	IGDCC3	Q8IVU1	814 aa		4.27	□□□□□ -1.73
CD44-238	ENST00000534296	DCAF4	Q8WV16	495 aa		4.27	□□□□□ -1.73
CD44-238	ENST00000534296	PWWP2A	Q96N64	755 aa		4.27	□□□□□ -1.73
CD44-238	ENST00000534296	ALG1	Q9BT22	464 aa		4.27	□□□□□ -1.73
CD44-238	ENST00000534296	SPATA9	Q9BWV2	254 aa		4.27	□□□□□ -1.73
CD44-238	ENST00000534296	GPR27	Q9NS67	375 aa		4.27	□□□□□ -1.73
CD44-238	ENST00000534296	MSRB2	Q9Y3D2	182 aa		4.27	□□□□□ -1.73
CD44-238	ENST00000534296		X6R8D5	127 aa		4.27	□□□□□ -1.73
CD44-238	ENST00000534296	IRS2	Q9Y4H2	1338 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	SASH1	O94885	1247 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	ASGR2	P07307	311 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	CYP2C8	P10632	490 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	FPR2	P25090	351 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	PML	P29590	882 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	SUMO1	P63165	101 aa	Known RBP	4.26	□□□□□ -1.73
CD44-238	ENST00000534296	SF1	Q15637	639 aa	Known RBP	4.26	□□□□□ -1.73
CD44-238	ENST00000534296	B3GNT8	Q7Z7M8	397 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	FAM129C	Q86XR2	697 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	CCDC103	Q8IW40	242 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	SP8	Q8IXZ3	490 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296		Q8N1Y9	231 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	KREMEN2	Q8NCW0	462 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	RCBTB1	Q8NDN9	531 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	PLEKHO2	Q8TD55	490 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	CPA5	Q8WXQ8	436 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	DPF3	Q92784	378 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	DEPDC7	Q96QD5	511 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	SRPK1	Q96SB4	655 aa	Known RBP	4.26	□□□□□ -1.73
CD44-238	ENST00000534296	PHF20	Q9BVI0	1012 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	RXFP1	Q9HBX9	757 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	ARHGEF4	Q9NR80	690 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	NPFFR2	Q9Y5X5	522 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	PMF1-BGLAP	U3KQ54	211 aa		4.26	□□□□□ -1.73
CD44-238	ENST00000534296	AQP7	O14520	342 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	HGS	O14964	777 aa	Predicted RBP	4.25	□□□□□ -1.73
CD44-238	ENST00000534296	DLX3	O60479	287 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	GRIA2	P42262	883 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	FOXO4	P98177	505 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	CAP1	Q01518	475 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	CACNB2	Q08289	660 aa	Predicted RBP	4.25	□□□□□ -1.73
CD44-238	ENST00000534296	RBL2	Q08999	1139 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	SPIRE1	Q08AE8	756 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	NFE2L2	Q16236	605 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	LONRF2	Q1L5Z9	754 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	ERICH6B	Q5W0A0	696 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	STEAP3	Q658P3	488 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	MILR1	Q7Z6M3	343 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	C1QL4	Q86Z23	238 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	CILP2	Q8IUL8	1156 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	SCUBE1	Q8IWY4	988 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	IFNL3	Q8IZI9	196 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	4.25	□□□□□ -1.73
CD44-238	ENST00000534296	PMFBP1	Q8TBY8	1022 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	PHOSPHO1	Q8TCT1	267 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	PANK1	Q8TE04	598 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	C1orf159	Q96HA4	380 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	KRTAP4-7	Q9BYR0	210 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	ZCCHC4	Q9H5U6	513 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	PFDN2	Q9UHV9	154 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	TMEFF2	Q9UIK5	374 aa	Predicted RBP	4.25	□□□□□ -1.73
CD44-238	ENST00000534296	PALD1	Q9ULE6	856 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	ZNF652	Q9Y2D9	606 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	PCDHB4	Q9Y5E5	795 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	HCFC2	Q9Y5Z7	792 aa		4.25	□□□□□ -1.73
CD44-238	ENST00000534296	SMARCA5	O60264	1052 aa	Predicted RBP	4.24	□□□□□ -1.73
CD44-238	ENST00000534296	PPP1R11	O60927	126 aa	Predicted RBP	4.24	□□□□□ -1.73
CD44-238	ENST00000534296	IGFBP6	P24592	240 aa	Predicted RBP	4.24	□□□□□ -1.73
CD44-238	ENST00000534296	GRK2	P25098	689 aa		4.24	□□□□□ -1.73
CD44-238	ENST00000534296	GRK3	P35626	688 aa		4.24	□□□□□ -1.73
CD44-238	ENST00000534296	LIMS1	P48059	325 aa		4.24	□□□□□ -1.73
CD44-238	ENST00000534296	GPR85	P60893	370 aa		4.24	□□□□□ -1.73
CD44-238	ENST00000534296	NKX3-2	P78367	333 aa		4.24	□□□□□ -1.73
CD44-238	ENST00000534296	CYP4F3	Q08477	520 aa		4.24	□□□□□ -1.73
CD44-238	ENST00000534296	STYK1	Q6J9G0	422 aa		4.24	□□□□□ -1.73
CD44-238	ENST00000534296	CYP4F22	Q6NT55	531 aa		4.24	□□□□□ -1.73
CD44-238	ENST00000534296	TTLL7	Q6ZT98	887 aa		4.24	□□□□□ -1.73
CD44-238	ENST00000534296	MAMDC2	Q7Z304	686 aa	Predicted RBP	4.24	□□□□□ -1.73
CD44-238	ENST00000534296	MTDH	Q86UE4	582 aa	Known RBP	4.24	□□□□□ -1.73
CD44-238	ENST00000534296	NLRP10	Q86W26	655 aa		4.24	□□□□□ -1.73
CD44-238	ENST00000534296	TRIM48	Q8IWZ4	208 aa		4.24	□□□□□ -1.73
CD44-238	ENST00000534296	LINC01356	Q8N9X3	169 aa		4.24	□□□□□ -1.73
CD44-238	ENST00000534296	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	4.24	□□□□□ -1.73
CD44-238	ENST00000534296	SMARCC2	Q8TAQ2	1214 aa		4.24	□□□□□ -1.73
CD44-238	ENST00000534296	MKL1	Q969V6	931 aa		4.24	□□□□□ -1.73
CD44-238	ENST00000534296	DACT3	Q96B18	629 aa	Predicted RBP	4.24	□□□□□ -1.73
CD44-238	ENST00000534296	FBLN5	Q9UBX5	448 aa		4.24	□□□□□ -1.73
CD44-238	ENST00000534296	KDM2B	Q8NHM5	1336 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	TRBV23-1	A0A0A0MS06	115 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	FAM47E-STBD1	D6RA91	191 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	GNAT1	P11488	350 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	LCP1	P13796	627 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	BMP7	P18075	431 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	FBLN1	P23142	703 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	SERINC3	Q13530	473 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	FBLN7	Q53RD9	439 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	CD300LD	Q6UXZ3	194 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	SPOCD1	Q6ZMY3	1216 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	LCNL1	Q6ZST4	164 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	EP400NL	Q6ZTU2	488 aa		4.23	□□□□□ -1.73

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