RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 TRIM9Q9C026 710 aa12.33□□□□□ -0.44
TRIM3-211ENST00000532542 MYOZ2Q9NPC6 264 aa12.33□□□□□ -0.44
TRIM3-211ENST00000532542 PRR12Q9ULL5 1215 aa12.33□□□□□ -0.44
TRIM3-211ENST00000532542 MORC2Q9Y6X9 1032 aaPredicted RBP12.33□□□□□ -0.44
TRIM3-211ENST00000532542 CASP14P31944 242 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 FXR2P51116 673 aaKnown RBP eCLIP12.32□□□□□ -0.44
TRIM3-211ENST00000532542 ETF1P62495 437 aaKnown RBP12.32□□□□□ -0.44
TRIM3-211ENST00000532542 ARID5BQ14865 1188 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 APOBEC3FQ8IUX4 373 aaKnown RBP12.32□□□□□ -0.44
TRIM3-211ENST00000532542 GMCL1P1Q8NEA9 526 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 MTFR1LQ9H019 292 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 NUCKS1Q9H1E3 243 aaKnown RBP12.32□□□□□ -0.44
TRIM3-211ENST00000532542 GUCA1BQ9UMX6 200 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 BTAF1O14981 1849 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 TACC1O75410 805 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 SMTNP53814 917 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 UBXN2AP68543 259 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 SETQ01105 290 aaPredicted RBP12.32□□□□□ -0.44
TRIM3-211ENST00000532542 FMR1Q06787 632 aaKnown RBP eCLIP12.32□□□□□ -0.44
TRIM3-211ENST00000532542 VWA3BQ502W6 1294 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 FMNL3Q8IVF7 1028 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 TBC1D5Q92609 795 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 BICD1Q96G01 975 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 ERO1AQ96HE7 468 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 GBP3Q9H0R5 595 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 SPTLC3Q9NUV7 552 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 POTEB2H3BUK9 544 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 GAP43P17677 238 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 GNPTABQ3T906 1256 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 HSP90B2PQ58FF3 399 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 DPY19L2Q6NUT2 758 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 PANX2Q96RD6 677 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 NACC1Q96RE7 527 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 TMEM39BQ9GZU3 492 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 PCDHB13Q9Y5F0 798 aa12.32□□□□□ -0.44
TRIM3-211ENST00000532542 TESPA1A2RU30 521 aaPredicted RBP12.31□□□□□ -0.44
TRIM3-211ENST00000532542 TBX3O15119 743 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 SLC26A4O43511 780 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 PAFAH1B1P43034 410 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 TUBB4BP68371 445 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 CCDC122Q5T0U0 273 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 LPAR1Q92633 364 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 TSGA10Q9BZW7 698 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 DCAF8L1A6NGE4 600 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 FDX1P10109 184 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 GABPAQ06546 454 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 RBL2Q08999 1139 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 MICALL2Q8IY33 904 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 EEF2KMTQ96G04 330 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 C7orf25Q9BPX7 421 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 FAM198AQ9UFP1 575 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 CNOT7Q9UIV1 285 aaKnown RBP12.31□□□□□ -0.44
TRIM3-211ENST00000532542 CLEC11AQ9Y240 323 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 RHOBTB3O94955 611 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 IRX3P78415 501 aaPredicted RBP12.31□□□□□ -0.44
TRIM3-211ENST00000532542 SP4Q02446 784 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 TUBB2AQ13885 445 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 IFI16Q16666 785 aaKnown RBP12.31□□□□□ -0.44
TRIM3-211ENST00000532542 FAM83AQ86UY5 434 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 ZFPM1Q8IX07 1006 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 CEP112Q8N8E3 955 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 TUBB2BQ9BVA1 445 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 FAM207AQ9NSI2 230 aaPredicted RBP12.31□□□□□ -0.44
TRIM3-211ENST00000532542 LARSQ9P2J5 1176 aaKnown RBP12.31□□□□□ -0.44
TRIM3-211ENST00000532542 CXCL9Q07325 125 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 ADAM9Q13443 819 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 MAN2A1Q16706 1144 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 FAM178BQ8IXR5 827 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 PPP1R13BQ96KQ4 1090 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 JADE2Q9NQC1 790 aa12.31□□□□□ -0.44
TRIM3-211ENST00000532542 ARMCX3Q9UH62 379 aaPredicted RBP12.31□□□□□ -0.44
TRIM3-211ENST00000532542 R3HDM1Q15032 1099 aaKnown RBP12.3□□□□□ -0.44
TRIM3-211ENST00000532542 NT5DC1Q5TFE4 455 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 FKBP1CQ5VVH2 108 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 MKL1Q969V6 931 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 KCNF1Q9H3M0 494 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 METTL14Q9HCE5 456 aaKnown RBP12.3□□□□□ -0.44
TRIM3-211ENST00000532542 MEIS1O00470 390 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 AP5Z1O43299 807 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 LRRC41Q15345 812 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 PTPN21Q16825 1174 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 TYW1BQ6NUM6 668 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 RASGRP2Q7LDG7 609 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 ADSSL1Q8N142 457 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 GOLGA5Q8TBA6 731 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 IWS1Q96ST2 819 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 GINM1Q9NU53 330 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 EXOC7Q9UPT5 735 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 WDR46O15213 610 aaKnown RBP12.3□□□□□ -0.44
TRIM3-211ENST00000532542 VEGFAP15692 232 aaPredicted RBP12.3□□□□□ -0.44
TRIM3-211ENST00000532542 MCM3P25205 808 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 ARID5AQ03989 594 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 PPP2R3AQ06190 1150 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 CKAP4Q07065 602 aaKnown RBP12.3□□□□□ -0.44
TRIM3-211ENST00000532542 SPDYE2Q495Y8 402 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 SLC9C1Q4G0N8 1177 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 LDHDQ86WU2 507 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 GUF1Q8N442 669 aaKnown RBP12.3□□□□□ -0.44
TRIM3-211ENST00000532542 WRNIP1Q96S55 665 aa12.3□□□□□ -0.44
TRIM3-211ENST00000532542 EMILIN3Q9NT22 766 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms