RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 AFG1LQ8WV93 481 aa15.38■□□□□ 0.05
VPS28-211ENST00000530790 CUL5Q93034 780 aa15.38■□□□□ 0.05
VPS28-211ENST00000530790 TRPV6Q9H1D0 765 aa15.38■□□□□ 0.05
VPS28-211ENST00000530790 LAMA2P24043 3122 aaKnown RBP15.37■□□□□ 0.05
VPS28-211ENST00000530790 SUPT20HL2P0C7V6 817 aa15.37■□□□□ 0.05
VPS28-211ENST00000530790 CSF2RAP15509 400 aa15.37■□□□□ 0.05
VPS28-211ENST00000530790 KCNV1Q6PIU1 500 aa15.37■□□□□ 0.05
VPS28-211ENST00000530790 Q7L0L9 218 aa15.37■□□□□ 0.05
VPS28-211ENST00000530790 SRBD1Q8N5C6 995 aaKnown RBP15.37■□□□□ 0.05
VPS28-211ENST00000530790 IL31RAQ8NI17 732 aa15.37■□□□□ 0.05
VPS28-211ENST00000530790 DDX41Q9UJV9 622 aaKnown RBP15.37■□□□□ 0.05
VPS28-211ENST00000530790 CYP2C18P33260 490 aa15.36■□□□□ 0.05
VPS28-211ENST00000530790 SMAD3P84022 425 aaKnown RBP15.36■□□□□ 0.05
VPS28-211ENST00000530790 NBPF20Q3BBV1 942 aa15.36■□□□□ 0.05
VPS28-211ENST00000530790 TSGA10IPQ3SY00 556 aa15.36■□□□□ 0.05
VPS28-211ENST00000530790 ZNF697Q5TEC3 545 aa15.36■□□□□ 0.05
VPS28-211ENST00000530790 NFRKBQ6P4R8 1299 aa15.36■□□□□ 0.05
VPS28-211ENST00000530790 PSRC1Q6PGN9 363 aaPredicted RBP15.36■□□□□ 0.05
VPS28-211ENST00000530790 TMTC3Q6ZXV5 915 aa15.36■□□□□ 0.05
VPS28-211ENST00000530790 DHX32Q7L7V1 743 aaKnown RBP15.36■□□□□ 0.05
VPS28-211ENST00000530790 VSIG10LQ86VR7 867 aa15.36■□□□□ 0.05
VPS28-211ENST00000530790 RASEFQ8IZ41 740 aa15.36■□□□□ 0.05
VPS28-211ENST00000530790 CMTR1Q8N1G2 835 aaKnown RBP15.36■□□□□ 0.05
VPS28-211ENST00000530790 FANCBQ8NB91 859 aa15.36■□□□□ 0.05
VPS28-211ENST00000530790 SMARCC2Q8TAQ2 1214 aa15.36■□□□□ 0.05
VPS28-211ENST00000530790 EMID1Q96A84 441 aaPredicted RBP15.36■□□□□ 0.05
VPS28-211ENST00000530790 TCEANC2Q96MN5 208 aa15.36■□□□□ 0.05
VPS28-211ENST00000530790 NOC4LQ9BVI4 516 aaKnown RBP15.36■□□□□ 0.05
VPS28-211ENST00000530790 TRMT13Q9NUP7 481 aaKnown RBP15.36■□□□□ 0.05
VPS28-211ENST00000530790 FRMPD4Q14CM0 1322 aa15.36■□□□□ 0.05
VPS28-211ENST00000530790 KIAA1217Q5T5P2 1943 aa15.35■□□□□ 0.05
VPS28-211ENST00000530790 HMGB1P09429 215 aaKnown RBP15.35■□□□□ 0.05
VPS28-211ENST00000530790 CHMP4BP1P59074 171 aa15.35■□□□□ 0.05
VPS28-211ENST00000530790 PTPN11Q06124 597 aaPredicted RBP15.35■□□□□ 0.05
VPS28-211ENST00000530790 LAMC2Q13753 1193 aa15.35■□□□□ 0.05
VPS28-211ENST00000530790 DGKDQ16760 1214 aa15.35■□□□□ 0.05
VPS28-211ENST00000530790 ADCK5Q3MIX3 580 aa15.35■□□□□ 0.05
VPS28-211ENST00000530790 GNPTABQ3T906 1256 aa15.35■□□□□ 0.05
VPS28-211ENST00000530790 FAM109BQ6ICB4 259 aaPredicted RBP15.35■□□□□ 0.05
VPS28-211ENST00000530790 APOA5Q6Q788 366 aa15.35■□□□□ 0.05
VPS28-211ENST00000530790 DHX37Q8IY37 1157 aaKnown RBP15.35■□□□□ 0.05
VPS28-211ENST00000530790 PPTC7Q8NI37 304 aa15.35■□□□□ 0.05
VPS28-211ENST00000530790 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.35■□□□□ 0.051e-8■■□□□ 11.9
VPS28-211ENST00000530790 RBM28Q9NW13 759 aaKnown RBP15.35■□□□□ 0.05
VPS28-211ENST00000530790 UMODL1Q5DID0 1318 aa15.35■□□□□ 0.05
VPS28-211ENST00000530790 SCN10AQ9Y5Y9 1956 aa15.35■□□□□ 0.05
VPS28-211ENST00000530790 STAM2O75886 525 aa15.34■□□□□ 0.05
VPS28-211ENST00000530790 RGS20O76081 388 aa15.34■□□□□ 0.05
VPS28-211ENST00000530790 REC8O95072 547 aa15.34■□□□□ 0.05
VPS28-211ENST00000530790 CASTP20810 708 aaKnown RBP15.34■□□□□ 0.05
VPS28-211ENST00000530790 UBA1P22314 1058 aaKnown RBP15.34■□□□□ 0.05
VPS28-211ENST00000530790 FGD1P98174 961 aa15.34■□□□□ 0.05
VPS28-211ENST00000530790 EXOSC10Q01780 885 aaKnown RBP15.34■□□□□ 0.05
VPS28-211ENST00000530790 CCDC82Q8N4S0 544 aa15.34■□□□□ 0.05
VPS28-211ENST00000530790 KATNAL1Q9BW62 490 aa15.34■□□□□ 0.05
VPS28-211ENST00000530790 WNT8AQ9H1J5 351 aa15.34■□□□□ 0.05
VPS28-211ENST00000530790 IL23AQ9NPF7 189 aa15.34■□□□□ 0.05
VPS28-211ENST00000530790 MTMR10Q9NXD2 777 aa15.34■□□□□ 0.05
VPS28-211ENST00000530790 NOD1Q9Y239 953 aa15.34■□□□□ 0.05
VPS28-211ENST00000530790 GOLGA8AA7E2F4 631 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 GOLGA8BA8MQT2 603 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 PIK3CDO00329 1044 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 ZBTB43O43298 467 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 GGPS1O95749 300 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 ACRP10323 421 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 TGFB3P10600 412 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 CYP2C9P11712 490 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 CCL23P55773 120 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 RTN1Q16799 776 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 TMEM240Q5SV17 173 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 USP17L6PQ6QN14 398 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 HEATR3Q7Z4Q2 680 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 PPP1R13LQ8WUF5 828 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 SPATA33Q96N06 139 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 MTIF3Q9H2K0 278 aaKnown RBP15.33■□□□□ 0.04
VPS28-211ENST00000530790 BAZ2BQ9UIF8 2168 aaKnown RBP15.33■□□□□ 0.04
VPS28-211ENST00000530790 CNTNAP5Q8WYK1 1306 aa15.33■□□□□ 0.04
VPS28-211ENST00000530790 KLF18A0A0U1RQI7 1052 aa15.32■□□□□ 0.04
VPS28-211ENST00000530790 hCG_1642624A0A1W2PR95 340 aa15.32■□□□□ 0.04
VPS28-211ENST00000530790 MEIS2O14770 477 aa15.32■□□□□ 0.04
VPS28-211ENST00000530790 SORBS3O60504 671 aa15.32■□□□□ 0.04
VPS28-211ENST00000530790 F2P00734 622 aa15.32■□□□□ 0.04
VPS28-211ENST00000530790 ZNF286BP0CG31 522 aa15.32■□□□□ 0.04
VPS28-211ENST00000530790 HSPA4P34932 840 aa15.32■□□□□ 0.04
VPS28-211ENST00000530790 CELF3Q5SZQ8 465 aaKnown RBP15.32■□□□□ 0.04
VPS28-211ENST00000530790 C16orf59Q7L2K0 433 aa15.32■□□□□ 0.04
VPS28-211ENST00000530790 ZFP91Q96JP5 570 aaPredicted RBP15.32■□□□□ 0.04
VPS28-211ENST00000530790 FAM161BQ96MY7 647 aa15.32■□□□□ 0.04
VPS28-211ENST00000530790 JAKMIP1Q96N16 626 aaKnown RBP15.32■□□□□ 0.04
VPS28-211ENST00000530790 INPP4AQ96PE3 977 aaPredicted RBP15.32■□□□□ 0.04
VPS28-211ENST00000530790 PSTPIP2Q9H939 334 aa15.32■□□□□ 0.04
VPS28-211ENST00000530790 MLXIPQ9HAP2 919 aa15.32■□□□□ 0.04
VPS28-211ENST00000530790 NAP1L2Q9ULW6 460 aaPredicted RBP15.32■□□□□ 0.04
VPS28-211ENST00000530790 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.31■□□□□ 0.04
VPS28-211ENST00000530790 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.31■□□□□ 0.04
VPS28-211ENST00000530790 FIBPO43427 364 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 RCAN1P53805 252 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 MRPS9P82933 396 aaKnown RBP15.31■□□□□ 0.04
VPS28-211ENST00000530790 BFSP2Q13515 415 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 MFSD10Q14728 455 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms