RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PDHBP11177 359 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 DNA2P51530 1060 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 VAV2P52735 878 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 GSTO1P78417 241 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 GRM4Q14833 912 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 ALS2CLQ60I27 953 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 ZNF662Q6ZS27 426 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 TEX11Q8IYF3 940 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 IQCKQ8N0W5 287 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 ADSSL1Q8N142 457 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 GIMAP7Q8NHV1 300 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 PIK3R5Q8WYR1 880 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 CCDC47Q96A33 483 aaKnown RBP15.7■□□□□ 0.1
USP48-213ENST00000529637 MCM8Q9UJA3 840 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 A0A1W2PQC6 194 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 CCDC40Q4G0X9 1142 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 IQCEQ6IPM2 695 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 EMBQ6PCB8 327 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 ZNF804AQ7Z570 1209 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 EYA3Q99504 573 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 A1CFQ9NQ94 594 aaKnown RBP15.7■□□□□ 0.1
USP48-213ENST00000529637 SEC63Q9UGP8 760 aaKnown RBP15.7■□□□□ 0.1
USP48-213ENST00000529637 ROBO1Q9Y6N7 1651 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 BACH1O14867 736 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 CHUKO15111 745 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 RASSF9O75901 435 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 LDHCP07864 332 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 PTGISQ16647 500 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 BARGINQ6ZT62 677 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 CABP7Q86V35 215 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 AMIGO3Q86WK7 504 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 KIRREL3Q8IZU9 778 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 CSGALNACT2Q8N6G5 542 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 MYCBPAPQ8TBZ2 947 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 N4BP2L2Q92802 583 aaPredicted RBP15.7■□□□□ 0.1
USP48-213ENST00000529637 UBA5Q9GZZ9 404 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 COL16A1Q07092 1604 aaPredicted RBP15.69■□□□□ 0.1
USP48-213ENST00000529637 PPP1R37O75864 691 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 UFL1O94874 794 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 SRGNP10124 158 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 BTDP43251 543 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 PDE4DQ08499 809 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 TBC1D8BQ0IIM8 1120 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 NLRP14Q86W24 1093 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 FNBP4Q8N3X1 1017 aaPredicted RBP15.69■□□□□ 0.1
USP48-213ENST00000529637 CNBD1Q8NA66 436 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 RPGRQ92834 1020 aaKnown RBP15.69■□□□□ 0.1
USP48-213ENST00000529637 TUBGCP2Q9BSJ2 902 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 VCPKMTQ9H867 229 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 SLC40A1Q9NP59 571 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 SMCO2A6NFE2 343 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 PLCG1P19174 1290 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 ELF1P32519 619 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 TECP42680 631 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 MTIF2P46199 727 aaKnown RBP15.69■□□□□ 0.1
USP48-213ENST00000529637 EIF6P56537 245 aaKnown RBP15.69■□□□□ 0.1
USP48-213ENST00000529637 KDM7AQ6ZMT4 941 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 FAM228AQ86W67 206 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 C4orf32Q8N8J7 132 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 PPANQ9NQ55 473 aaKnown RBP15.69■□□□□ 0.1
USP48-213ENST00000529637 EXOC1Q9NV70 894 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 CNTNAP4Q9C0A0 1308 aa15.69■□□□□ 0.1
USP48-213ENST00000529637 EPHB6O15197 1021 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 ERCC3P19447 782 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 NR1D1P20393 614 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 C8orf74Q6P047 294 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 CEP57Q86XR8 500 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 CAVIN3Q969G5 261 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 CCDC42Q96M95 316 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 SH3GLB2Q9NR46 395 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 ZNHIT6Q9NWK9 470 aaKnown RBP15.68■□□□□ 0.1
USP48-213ENST00000529637 BARHL2Q9NY43 387 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 BIN2Q9UBW5 565 aaPredicted RBP15.68■□□□□ 0.1
USP48-213ENST00000529637 E7EVH7 732 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 CLGNO14967 610 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 RAD21O60216 631 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 HPDP32754 393 aaPredicted RBP15.68■□□□□ 0.1
USP48-213ENST00000529637 RDXP35241 583 aaKnown RBP15.68■□□□□ 0.1
USP48-213ENST00000529637 SLC35G1Q2M3R5 365 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 NAALADL2Q58DX5 795 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 CFAP58Q5T655 872 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 CCDC181Q5TID7 509 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 TRIM58Q8NG06 486 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 IFIH1Q9BYX4 1025 aaKnown RBP15.68■□□□□ 0.1
USP48-213ENST00000529637 ZNF287Q9HBT7 754 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 EPB41L5Q9HCM4 733 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 ARHGAP20Q9P2F6 1191 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 ATXN2Q99700 1313 aaKnown RBP15.68■□□□□ 0.1
USP48-213ENST00000529637 CCDC189A1A4V9 331 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 STXBP3O00186 592 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 KIF1CO43896 1103 aaKnown RBP15.68■□□□□ 0.1
USP48-213ENST00000529637 SMTNP53814 917 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 PICALMQ13492 652 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 NEDD9Q14511 834 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 TXNRD1Q16881 649 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 PREPLQ4J6C6 727 aaPredicted RBP15.68■□□□□ 0.1
USP48-213ENST00000529637 SH2D4AQ9H788 454 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 PCDHA13Q9Y5I0 950 aa15.68■□□□□ 0.1
USP48-213ENST00000529637 FRMD3A2A2Y4 597 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 BUB1O43683 1085 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms