RNA–Protein interactions for RNA: ENST00000529355.1

CTR9-204, Transcript of CTR9 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene CTR9, Length 1,146 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9-204ENST00000529355 TRMT2BQ96GJ1 504 aaKnown RBP6.91□□□□□ -1.3
CTR9-204ENST00000529355 TMEM169Q96HH4 297 aa6.91□□□□□ -1.3
CTR9-204ENST00000529355 SLC6A17Q9H1V8 727 aa6.91□□□□□ -1.3
CTR9-204ENST00000529355 IPPKQ9H8X2 491 aa6.91□□□□□ -1.3
CTR9-204ENST00000529355 TRIM39Q9HCM9 518 aa6.91□□□□□ -1.3
CTR9-204ENST00000529355 SRGAP2CP0DJJ0 459 aa6.9□□□□□ -1.3
CTR9-204ENST00000529355 VIPR1P32241 457 aa6.9□□□□□ -1.3
CTR9-204ENST00000529355 ARL4AP40617 200 aa6.9□□□□□ -1.3
CTR9-204ENST00000529355 GABREP78334 506 aa6.9□□□□□ -1.3
CTR9-204ENST00000529355 ABHD17CQ6PCB6 329 aa6.9□□□□□ -1.3
CTR9-204ENST00000529355 RSPO2Q6UXX9 243 aaPredicted RBP6.9□□□□□ -1.3
CTR9-204ENST00000529355 RBM12BQ8IXT5 1001 aaKnown RBP6.9□□□□□ -1.3
CTR9-204ENST00000529355 IFNL3Q8IZI9 196 aa6.9□□□□□ -1.3
CTR9-204ENST00000529355 POU5F2Q8N7G0 328 aa6.9□□□□□ -1.3
CTR9-204ENST00000529355 ZNF552Q9H707 407 aaPredicted RBP6.9□□□□□ -1.3
CTR9-204ENST00000529355 X6R8D5 127 aa6.9□□□□□ -1.3
CTR9-204ENST00000529355 OR14I1A6ND48 311 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 SGSM2O43147 1006 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 MYO1BO43795 1136 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 SOD2P04179 222 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 KCNA6P17658 529 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 NCKAP1LP55160 1127 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 PRR5P85299 388 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 GUCY1A3Q02108 690 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 TRIM61Q5EBN2 209 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 ZC3H12BQ5HYM0 836 aaKnown RBP6.89□□□□□ -1.31
CTR9-204ENST00000529355 WWC2Q6AWC2 1192 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 SDE2Q6IQ49 451 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 HOMER1Q86YM7 354 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 Q8N1Y9 231 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 PCDH19Q8TAB3 1148 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 APPBP2Q92624 585 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 MCOLN1Q9GZU1 580 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 DCP1AQ9NPI6 582 aaPredicted RBP6.89□□□□□ -1.31
CTR9-204ENST00000529355 SFMBT1Q9UHJ3 866 aa6.89□□□□□ -1.31
CTR9-204ENST00000529355 PLD2O14939 933 aa6.88□□□□□ -1.31
CTR9-204ENST00000529355 CDC45O75419 566 aa6.88□□□□□ -1.31
CTR9-204ENST00000529355 DNAJC8O75937 253 aaPredicted RBP6.88□□□□□ -1.31
CTR9-204ENST00000529355 MPOP05164 745 aa6.88□□□□□ -1.31
CTR9-204ENST00000529355 YBX1P67809 324 aaKnown RBP6.88□□□□□ -1.31
CTR9-204ENST00000529355 MESP2Q0VG99 397 aa6.88□□□□□ -1.31
CTR9-204ENST00000529355 PABPC4Q13310 644 aaKnown RBP eCLIP6.88□□□□□ -1.31
CTR9-204ENST00000529355 ZNF460Q14592 562 aa6.88□□□□□ -1.31
CTR9-204ENST00000529355 PLEKHN1Q494U1 663 aaPredicted RBP6.88□□□□□ -1.31
CTR9-204ENST00000529355 PAQR3Q6TCH7 311 aa6.88□□□□□ -1.31
CTR9-204ENST00000529355 MAMDC2Q7Z304 686 aaPredicted RBP6.88□□□□□ -1.31
CTR9-204ENST00000529355 MTDHQ86UE4 582 aaKnown RBP6.88□□□□□ -1.31
CTR9-204ENST00000529355 IRF2BP1Q8IU81 584 aa6.88□□□□□ -1.31
CTR9-204ENST00000529355 SYT3Q9BQG1 590 aa6.88□□□□□ -1.31
CTR9-204ENST00000529355 MRPL4Q9BYD3 311 aaKnown RBP6.88□□□□□ -1.31
CTR9-204ENST00000529355 TCRBV5S4A2TA0A5A2 114 aa6.87□□□□□ -1.31
CTR9-204ENST00000529355 H7BY64 318 aa6.87□□□□□ -1.31
CTR9-204ENST00000529355 NKRFO15226 690 aaKnown RBP eCLIP6.87□□□□□ -1.31
CTR9-204ENST00000529355 SRGAP3O43295 1099 aa6.87□□□□□ -1.31
CTR9-204ENST00000529355 CYBBP04839 570 aa6.87□□□□□ -1.31
CTR9-204ENST00000529355 GRK2P25098 689 aa6.87□□□□□ -1.31
CTR9-204ENST00000529355 GRK3P35626 688 aa6.87□□□□□ -1.31
CTR9-204ENST00000529355 SRSF3P84103 164 aaKnown RBP6.87□□□□□ -1.31
CTR9-204ENST00000529355 ZNF648Q5T619 568 aaPredicted RBP6.87□□□□□ -1.31
CTR9-204ENST00000529355 C16orf86Q6ZW13 317 aa6.87□□□□□ -1.31
CTR9-204ENST00000529355 TMC6Q7Z403 805 aa6.87□□□□□ -1.31
CTR9-204ENST00000529355 DHX37Q8IY37 1157 aaKnown RBP6.87□□□□□ -1.31
CTR9-204ENST00000529355 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.87□□□□□ -1.31
CTR9-204ENST00000529355 PIP4K2CQ8TBX8 421 aa6.87□□□□□ -1.31
CTR9-204ENST00000529355 ZFYVE21Q9BQ24 234 aa6.87□□□□□ -1.31
CTR9-204ENST00000529355 COQ6Q9Y2Z9 468 aa6.87□□□□□ -1.31
CTR9-204ENST00000529355 CCDC163A0A0D9SF12 145 aa6.86□□□□□ -1.31
CTR9-204ENST00000529355 TCRBV16S1A1N1A0A5B0 115 aa6.86□□□□□ -1.31
CTR9-204ENST00000529355 FAM83GA6ND36 823 aa6.86□□□□□ -1.31
CTR9-204ENST00000529355 ARVCFO00192 962 aa6.86□□□□□ -1.31
CTR9-204ENST00000529355 AQP7O14520 342 aa6.86□□□□□ -1.31
CTR9-204ENST00000529355 ENPP3O14638 875 aa6.86□□□□□ -1.31
CTR9-204ENST00000529355 CKMP06732 381 aa6.86□□□□□ -1.31
CTR9-204ENST00000529355 PYGMP11217 842 aa6.86□□□□□ -1.31
CTR9-204ENST00000529355 GTF2A2P52657 109 aa6.86□□□□□ -1.31
CTR9-204ENST00000529355 EPHB3P54753 998 aa6.86□□□□□ -1.31
CTR9-204ENST00000529355 KIZQ2M2Z5 673 aa6.86□□□□□ -1.31
CTR9-204ENST00000529355 DALRD3Q5D0E6 543 aaKnown RBP6.86□□□□□ -1.31
CTR9-204ENST00000529355 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.86□□□□□ -1.31
CTR9-204ENST00000529355 KRTAP9-8Q9BYQ0 159 aa6.86□□□□□ -1.31
CTR9-204ENST00000529355 EPB41L4BQ9H329 900 aa6.86□□□□□ -1.31
CTR9-204ENST00000529355 CNTD2Q9H8S5 307 aa6.86□□□□□ -1.31
CTR9-204ENST00000529355 CBLCQ9ULV8 474 aa6.86□□□□□ -1.31
CTR9-204ENST00000529355 TMA7Q9Y2S6 64 aaKnown RBP6.86□□□□□ -1.31
CTR9-204ENST00000529355 TNPO3Q9Y5L0 923 aaKnown RBP6.86□□□□□ -1.31
CTR9-204ENST00000529355 KCNK3O14649 394 aa6.85□□□□□ -1.31
CTR9-204ENST00000529355 IRS4O14654 1257 aaPredicted RBP6.85□□□□□ -1.31
CTR9-204ENST00000529355 KCNQ2O43526 872 aa6.85□□□□□ -1.31
CTR9-204ENST00000529355 LTFP02788 710 aa6.85□□□□□ -1.31
CTR9-204ENST00000529355 KRT1P04264 644 aa6.85□□□□□ -1.31
CTR9-204ENST00000529355 ZNF200P98182 395 aaPredicted RBP6.85□□□□□ -1.31
CTR9-204ENST00000529355 TCEA2Q15560 299 aa6.85□□□□□ -1.31
CTR9-204ENST00000529355 FNDC3BQ53EP0 1204 aaKnown RBP6.85□□□□□ -1.31
CTR9-204ENST00000529355 KIAA0907Q7Z7F0 614 aaPredicted RBP6.85□□□□□ -1.31
CTR9-204ENST00000529355 RIOX2Q8IUF8 465 aa6.85□□□□□ -1.31
CTR9-204ENST00000529355 MAGEB10Q96LZ2 347 aaPredicted RBP6.85□□□□□ -1.31
CTR9-204ENST00000529355 GCM1Q9NP62 436 aa6.85□□□□□ -1.31
CTR9-204ENST00000529355 MBD1Q9UIS9 605 aaPredicted RBP6.85□□□□□ -1.31
CTR9-204ENST00000529355 DBR1Q9UK59 544 aaKnown RBP6.85□□□□□ -1.31
CTR9-204ENST00000529355 PALD1Q9ULE6 856 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms