RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 PDE8AO60658 829 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 CRTAMO95727 393 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 POU3F3P20264 500 aaPredicted RBP4.44□□□□□ -1.7
CD44-229ENST00000528672 BCL6P41182 706 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 NFKB2Q00653 900 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 POU4F1Q01851 419 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 ZNF124Q15973 351 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 FNDC3BQ53EP0 1204 aaKnown RBP4.44□□□□□ -1.7
CD44-229ENST00000528672 CWF19L1Q69YN2 538 aaKnown RBP4.44□□□□□ -1.7
CD44-229ENST00000528672 CNNM4Q6P4Q7 775 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 IRF2BP1Q8IU81 584 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 FMNL3Q8IVF7 1028 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 SCUBE1Q8IWY4 988 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 MYLIPQ8WY64 445 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 MAP6Q96JE9 813 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 SYT3Q9BQG1 590 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 JAM3Q9BX67 310 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 CDIP1Q9H305 208 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 TNFRSF10DQ9UBN6 386 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 MCM8Q9UJA3 840 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 COQ6Q9Y2Z9 468 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 PCDHA2Q9Y5H9 948 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 TNPO3Q9Y5L0 923 aaKnown RBP4.44□□□□□ -1.7
CD44-229ENST00000528672 A0A087X0B3 334 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 SSU72P8A0A1W2PR75 194 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 KRTAP9-7A8MTY7 169 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 FADS2P1A8MWK0 482 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 ALG1L2C9J202 215 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 HRKO00198 91 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 KCNQ2O43526 872 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 SCG5P05408 212 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 COL6A2P12110 1019 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 HOXC12P31275 282 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 SEPHS1P49903 392 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 CDKN1CP49918 316 aaPredicted RBP4.43□□□□□ -1.7
CD44-229ENST00000528672 EXOSC10Q01780 885 aaKnown RBP4.43□□□□□ -1.7
CD44-229ENST00000528672 GRB10Q13322 594 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 SEPT7Q16181 437 aaKnown RBP4.43□□□□□ -1.7
CD44-229ENST00000528672 DDX42Q86XP3 938 aaKnown RBP eCLIP4.43□□□□□ -1.7
CD44-229ENST00000528672 ABHD4Q8TB40 342 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 CCDC136Q96JN2 1154 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 KCNJ15Q99712 375 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 TARS2Q9BW92 718 aaKnown RBP4.43□□□□□ -1.7
CD44-229ENST00000528672 MTFR1LQ9H019 292 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 IMPACTQ9P2X3 320 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 TCEAL9Q9UHQ7 104 aa4.43□□□□□ -1.7
CD44-229ENST00000528672 ZNF503-AS2A6NEH8 195 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.42□□□□□ -1.7
CD44-229ENST00000528672 NRDCO43847 1150 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 FARP2O94887 1054 aaPredicted RBP4.42□□□□□ -1.7
CD44-229ENST00000528672 ID4P47928 161 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 MVKQ03426 396 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 BRDTQ58F21 947 aaPredicted RBP4.42□□□□□ -1.7
CD44-229ENST00000528672 WWC2Q6AWC2 1192 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 RCSD1Q6JBY9 416 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 CYP2R1Q6VVX0 501 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 CEP128Q6ZU80 1094 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 SLCO6A1Q86UG4 719 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 CRACR2BQ8N4Y2 399 aaPredicted RBP4.42□□□□□ -1.7
CD44-229ENST00000528672 ATL2Q8NHH9 583 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 KCTD13Q8WZ19 329 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 SHISA4Q96DD7 197 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 PPP1R16BQ96T49 567 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 SLC6A17Q9H1V8 727 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 IPPKQ9H8X2 491 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 CRTAC1Q9NQ79 661 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 MAPRE3Q9UPY8 281 aa4.42□□□□□ -1.7
CD44-229ENST00000528672 NPHP3-ACAD11A0A0J9YXS1 232 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 A0A1W2PQ45 241 aaPredicted RBP4.41□□□□□ -1.7
CD44-229ENST00000528672 A0A1W2PQY0 241 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 TCRBV5S4A2TA0A5A2 114 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 LCHNA4D1U4 455 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 MEFVO15553 781 aaPredicted RBP4.41□□□□□ -1.7
CD44-229ENST00000528672 KPNA6O60684 536 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 PYGMP11217 842 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 CPEP16870 476 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 PMLP29590 882 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 NOP2P46087 812 aaKnown RBP4.41□□□□□ -1.7
CD44-229ENST00000528672 CORO7P57737 925 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 SUMO1P63165 101 aaKnown RBP4.41□□□□□ -1.7
CD44-229ENST00000528672 MAP4K2Q12851 820 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 FAM50AQ14320 339 aaKnown RBP4.41□□□□□ -1.7
CD44-229ENST00000528672 HSF5Q4G112 596 aaPredicted RBP4.41□□□□□ -1.7
CD44-229ENST00000528672 POMZP3Q6PJE2 187 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 DDX46Q7L014 1031 aaKnown RBP4.41□□□□□ -1.7
CD44-229ENST00000528672 RNF180Q86T96 592 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 LRRTM3Q86VH5 581 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 CERS3Q8IU89 383 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 NXPE1Q8N323 547 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 NAT16Q8N8M0 369 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 GSTCDQ8NEC7 633 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 FAM84AQ96KN4 292 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 MRPL4Q9BYD3 311 aaKnown RBP4.41□□□□□ -1.7
CD44-229ENST00000528672 MS4A5Q9H3V2 200 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 INTS7Q9NVH2 962 aaKnown RBP4.41□□□□□ -1.7
CD44-229ENST00000528672 SLC52A1Q9NWF4 448 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 H2AFY2Q9P0M6 372 aaPredicted RBP4.41□□□□□ -1.7
CD44-229ENST00000528672 MARCH2Q9P0N8 246 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 MAGEC2Q9UBF1 373 aaPredicted RBP4.41□□□□□ -1.7
CD44-229ENST00000528672 SFMBT1Q9UHJ3 866 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms