RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 MRPL14Q6P1L8 145 aaKnown RBP8.56□□□□□ -1.04
CD44-228ENST00000528455 FASTKD5Q7L8L6 764 aaKnown RBP8.56□□□□□ -1.04
CD44-228ENST00000528455 NBPF11Q86T75 865 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 MICU3Q86XE3 530 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 CCDC83Q8IWF9 413 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 LRRC47Q8N1G4 583 aaKnown RBP8.56□□□□□ -1.04
CD44-228ENST00000528455 LINC00528Q8N1L1 170 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 STAG2Q8N3U4 1231 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 SRBD1Q8N5C6 995 aaKnown RBP8.56□□□□□ -1.04
CD44-228ENST00000528455 CLMNQ96JQ2 1002 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 TSEN34Q9BSV6 310 aaKnown RBP8.56□□□□□ -1.04
CD44-228ENST00000528455 SPZ1Q9BXG8 430 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 RNF26Q9BY78 433 aaPredicted RBP8.56□□□□□ -1.04
CD44-228ENST00000528455 RIOX1Q9H6W3 641 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 NCOA5Q9HCD5 579 aaKnown RBP8.56□□□□□ -1.04
CD44-228ENST00000528455 DNAAF2Q9NVR5 837 aaKnown RBP8.56□□□□□ -1.04
CD44-228ENST00000528455 HOXC10Q9NYD6 342 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 FEM1BQ9UK73 627 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 KIAA1024Q9UPX6 916 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 KCNH4Q9UQ05 1017 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 SMC3Q9UQE7 1217 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 KIF3AQ9Y496 699 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 CCDC85CA6NKD9 419 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 WDR46O15213 610 aaKnown RBP8.55□□□□□ -1.04
CD44-228ENST00000528455 DKK1O94907 266 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 STAU1O95793 577 aaKnown RBP8.55□□□□□ -1.04
CD44-228ENST00000528455 NDUFB10O96000 172 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 RXRAP19793 462 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 PDCP20941 246 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 HOXA7P31268 230 aaPredicted RBP8.55□□□□□ -1.04
CD44-228ENST00000528455 TRAF1Q13077 416 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 PTK7Q13308 1070 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 NOM1Q5C9Z4 860 aaKnown RBP8.55□□□□□ -1.04
CD44-228ENST00000528455 TMTC3Q6ZXV5 915 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 CTU1Q7Z7A3 348 aaKnown RBP8.55□□□□□ -1.04
CD44-228ENST00000528455 FAM160B2Q86V87 743 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 CLEC10AQ8IUN9 316 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 CCDC144CPQ8IYA2 1237 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 TRIM22Q8IYM9 498 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 FAM177A1Q8N128 213 aaPredicted RBP8.55□□□□□ -1.04
CD44-228ENST00000528455 PRPF38AQ8NAV1 312 aaKnown RBP8.55□□□□□ -1.04
CD44-228ENST00000528455 NSUN7Q8NE18 718 aaKnown RBP8.55□□□□□ -1.04
CD44-228ENST00000528455 WASF1Q92558 559 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 OPTNQ96CV9 577 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 FEZ1Q99689 392 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 MYL10Q9BUA6 226 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 CFHR5Q9BXR6 569 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 ZNF395Q9H8N7 513 aaPredicted RBP8.55□□□□□ -1.04
CD44-228ENST00000528455 ELP3Q9H9T3 547 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 TMOD4Q9NZQ9 345 aa8.55□□□□□ -1.04
CD44-228ENST00000528455 A0A0G2JLL6 359 aaPredicted RBP8.54□□□□□ -1.04
CD44-228ENST00000528455 A0A1W2PRU2 124 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 USP17L15C9J2P7 530 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 USP17L13C9JLJ4 530 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 TMEM232C9JQI7 657 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 USP17L11C9JVI0 530 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 USP17L18D6R9N7 530 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 USP17L22D6RA61 530 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 USP17L17D6RBQ6 530 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 USP17L19D6RCP7 530 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 USP17L20D6RJB6 530 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 GPR25O00155 361 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 SPINT1O43278 529 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 DEXIO95424 95 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 FDPSP14324 419 aaKnown RBP8.54□□□□□ -1.04
CD44-228ENST00000528455 GJB2P29033 226 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 STAT2P52630 851 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 AKAP17AQ02040 695 aaKnown RBP8.54□□□□□ -1.04
CD44-228ENST00000528455 USP17L24Q0WX57 530 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 ST3GAL1Q11201 340 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 SNAPC2Q13487 334 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 COG2Q14746 738 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 KIAA1755Q5JYT7 1200 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 KCTD1Q719H9 257 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 PRRT2Q7Z6L0 340 aaPredicted RBP8.54□□□□□ -1.04
CD44-228ENST00000528455 ZNF296Q8WUU4 475 aaPredicted RBP8.54□□□□□ -1.04
CD44-228ENST00000528455 MTMR8Q96EF0 704 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 ETNK1Q9HBU6 452 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 ATP13A2Q9NQ11 1180 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.54□□□□□ -1.04
CD44-228ENST00000528455 ORC3Q9UBD5 711 aaPredicted RBP8.54□□□□□ -1.04
CD44-228ENST00000528455 PNMA2Q9UL42 364 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 MYH6P13533 1939 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 STK36Q9NRP7 1315 aa8.54□□□□□ -1.04
CD44-228ENST00000528455 BAZ2BQ9UIF8 2168 aaKnown RBP8.54□□□□□ -1.04
CD44-228ENST00000528455 PNMA6FA0A0J9YX94 578 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 TRIM75PA6NK02 468 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 TMEM229AB2RXF0 380 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 CYTH3O43739 400 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 FKTNO75072 461 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 UPP2O95045 317 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 ATG7O95352 703 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 PLEKHA8P1O95397 391 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 GOLGA8HP0CJ92 632 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 CETPP11597 493 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 GTF2A2P52657 109 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 HMGCS2P54868 508 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 PABPC4Q13310 644 aaKnown RBP eCLIP8.53□□□□□ -1.04
CD44-228ENST00000528455 PKN2Q16513 984 aaKnown RBP8.53□□□□□ -1.04
CD44-228ENST00000528455 LARP1BQ659C4 914 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms