RNA–Protein interactions for RNA: ENST00000527897.1

CAPN1-213, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 879 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-213ENST00000527897 PGM5Q15124 567 aa17.93■□□□□ 0.46
CAPN1-213ENST00000527897 SHHQ15465 462 aa17.93■□□□□ 0.46
CAPN1-213ENST00000527897 TSGA10IPQ3SY00 556 aa17.93■□□□□ 0.46
CAPN1-213ENST00000527897 FAM47CQ5HY64 1035 aa17.93■□□□□ 0.46
CAPN1-213ENST00000527897 C9orf50Q5SZB4 431 aa17.93■□□□□ 0.46
CAPN1-213ENST00000527897 CCDC62Q6P9F0 684 aa17.93■□□□□ 0.46
CAPN1-213ENST00000527897 APOA5Q6Q788 366 aa17.93■□□□□ 0.46
CAPN1-213ENST00000527897 TMTC3Q6ZXV5 915 aa17.93■□□□□ 0.46
CAPN1-213ENST00000527897 SMARCC2Q8TAQ2 1214 aa17.93■□□□□ 0.46
CAPN1-213ENST00000527897 AFG1LQ8WV93 481 aa17.93■□□□□ 0.46
CAPN1-213ENST00000527897 CUL5Q93034 780 aa17.93■□□□□ 0.46
CAPN1-213ENST00000527897 MTG1Q9BT17 334 aaPredicted RBP17.93■□□□□ 0.46
CAPN1-213ENST00000527897 TRPV6Q9H1D0 765 aa17.93■□□□□ 0.46
CAPN1-213ENST00000527897 TBX21Q9UL17 535 aa17.93■□□□□ 0.46
CAPN1-213ENST00000527897 BRPF3Q9ULD4 1205 aa17.93■□□□□ 0.46
CAPN1-213ENST00000527897 MYH7BA7E2Y1 1941 aa17.93■□□□□ 0.46
CAPN1-213ENST00000527897 GOLGA8AA7E2F4 631 aa17.92■□□□□ 0.46
CAPN1-213ENST00000527897 GOLGA8BA8MQT2 603 aa17.92■□□□□ 0.46
CAPN1-213ENST00000527897 TIMP1P01033 207 aa17.92■□□□□ 0.46
CAPN1-213ENST00000527897 HMGB1P09429 215 aaKnown RBP17.92■□□□□ 0.46
CAPN1-213ENST00000527897 SMARCA1P28370 1054 aa17.92■□□□□ 0.46
CAPN1-213ENST00000527897 RTN1Q16799 776 aa17.92■□□□□ 0.46
CAPN1-213ENST00000527897 LRIT3Q3SXY7 679 aa17.92■□□□□ 0.46
CAPN1-213ENST00000527897 USP17L6PQ6QN14 398 aa17.92■□□□□ 0.46
CAPN1-213ENST00000527897 HEATR3Q7Z4Q2 680 aa17.92■□□□□ 0.46
CAPN1-213ENST00000527897 SNX14Q9Y5W7 946 aa17.92■□□□□ 0.46
CAPN1-213ENST00000527897 B4GALT4O60513 344 aa17.91■□□□□ 0.46
CAPN1-213ENST00000527897 HSPA4P34932 840 aa17.91■□□□□ 0.46
CAPN1-213ENST00000527897 ARHGAP1Q07960 439 aa17.91■□□□□ 0.46
CAPN1-213ENST00000527897 BLOC1S2Q6QNY1 142 aa17.91■□□□□ 0.46
CAPN1-213ENST00000527897 SLC43A3Q8NBI5 491 aa17.91■□□□□ 0.46
CAPN1-213ENST00000527897 RBM28Q9NW13 759 aaKnown RBP17.91■□□□□ 0.46
CAPN1-213ENST00000527897 DDX41Q9UJV9 622 aaKnown RBP17.91■□□□□ 0.46
CAPN1-213ENST00000527897 A6NJR5 290 aa17.9■□□□□ 0.46
CAPN1-213ENST00000527897 KPNA6O60684 536 aa17.9■□□□□ 0.46
CAPN1-213ENST00000527897 CD4P01730 458 aa17.9■□□□□ 0.46
CAPN1-213ENST00000527897 MMP3P08254 477 aa17.9■□□□□ 0.46
CAPN1-213ENST00000527897 CYP2C18P33260 490 aa17.9■□□□□ 0.46
CAPN1-213ENST00000527897 EPHB4P54760 987 aa17.9■□□□□ 0.46
CAPN1-213ENST00000527897 NBPF20Q3BBV1 942 aa17.9■□□□□ 0.46
CAPN1-213ENST00000527897 Q6ZUG5 572 aa17.9■□□□□ 0.46
CAPN1-213ENST00000527897 VSIG10LQ86VR7 867 aa17.9■□□□□ 0.46
CAPN1-213ENST00000527897 DHX37Q8IY37 1157 aaKnown RBP17.9■□□□□ 0.46
CAPN1-213ENST00000527897 GPKOWQ92917 476 aaPredicted RBP eCLIP17.9■□□□□ 0.46
CAPN1-213ENST00000527897 ALDH8A1Q9H2A2 487 aaPredicted RBP17.9■□□□□ 0.46
CAPN1-213ENST00000527897 HIPK3Q9H422 1215 aa17.9■□□□□ 0.46
CAPN1-213ENST00000527897 TRMT13Q9NUP7 481 aaKnown RBP17.9■□□□□ 0.46
CAPN1-213ENST00000527897 RTEL1Q9NZ71 1219 aa17.9■□□□□ 0.46
CAPN1-213ENST00000527897 APOBRQ0VD83 1088 aa17.89■□□□□ 0.45
CAPN1-213ENST00000527897 MFSD5Q6N075 450 aa17.89■□□□□ 0.45
CAPN1-213ENST00000527897 TMEM199Q8N511 208 aa17.89■□□□□ 0.45
CAPN1-213ENST00000527897 BRF1Q92994 677 aa17.89■□□□□ 0.45
CAPN1-213ENST00000527897 RNPC3Q96LT9 517 aaKnown RBP17.89■□□□□ 0.45
CAPN1-213ENST00000527897 PSTPIP2Q9H939 334 aa17.89■□□□□ 0.45
CAPN1-213ENST00000527897 RGS20O76081 388 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 GGPS1O95749 300 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 CYP2C9P11712 490 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 CSF2RAP15509 400 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 CASTP20810 708 aaKnown RBP17.88■□□□□ 0.45
CAPN1-213ENST00000527897 METAP2P50579 478 aaKnown RBP eCLIP17.88■□□□□ 0.45
CAPN1-213ENST00000527897 CCL23P55773 120 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 LAMC2Q13753 1193 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 DGKDQ16760 1214 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 UBE2SQ16763 222 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 ERICH6BQ5W0A0 696 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 KCNV1Q6PIU1 500 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 Q7L0L9 218 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 KCNB2Q92953 911 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 SEZ6LQ9BYH1 1024 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 UMODL1Q5DID0 1318 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 CNTNAP5Q8WYK1 1306 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 SCN10AQ9Y5Y9 1956 aa17.88■□□□□ 0.45
CAPN1-213ENST00000527897 MEIS2O14770 477 aa17.87■□□□□ 0.45
CAPN1-213ENST00000527897 ACRP10323 421 aa17.87■□□□□ 0.45
CAPN1-213ENST00000527897 PSMA5P28066 241 aa17.87■□□□□ 0.45
CAPN1-213ENST00000527897 NAPAP54920 295 aa17.87■□□□□ 0.45
CAPN1-213ENST00000527897 PPIGQ13427 754 aaKnown RBP eCLIP17.87■□□□□ 0.458e-8■■■□□ 17.1
CAPN1-213ENST00000527897 GNPTABQ3T906 1256 aa17.87■□□□□ 0.45
CAPN1-213ENST00000527897 SPATA33Q96N06 139 aa17.87■□□□□ 0.45
CAPN1-213ENST00000527897 MLXIPQ9HAP2 919 aa17.87■□□□□ 0.45
CAPN1-213ENST00000527897 NOD1Q9Y239 953 aa17.87■□□□□ 0.45
CAPN1-213ENST00000527897 V9GY48 417 aaPredicted RBP17.87■□□□□ 0.45
CAPN1-213ENST00000527897 SUPT20HL2P0C7V6 817 aa17.86■□□□□ 0.45
CAPN1-213ENST00000527897 ZNF286BP0CG31 522 aa17.86■□□□□ 0.45
CAPN1-213ENST00000527897 UBA1P22314 1058 aaKnown RBP17.86■□□□□ 0.45
CAPN1-213ENST00000527897 RPS6KB1P23443 525 aa17.86■□□□□ 0.45
CAPN1-213ENST00000527897 CDC27P30260 824 aa17.86■□□□□ 0.45
CAPN1-213ENST00000527897 MRPS9P82933 396 aaKnown RBP17.86■□□□□ 0.45
CAPN1-213ENST00000527897 SP2Q02086 613 aa17.86■□□□□ 0.45
CAPN1-213ENST00000527897 CELF3Q5SZQ8 465 aaKnown RBP17.86■□□□□ 0.45
CAPN1-213ENST00000527897 WWC2Q6AWC2 1192 aa17.86■□□□□ 0.45
CAPN1-213ENST00000527897 DEFB123Q8N688 67 aa17.86■□□□□ 0.45
CAPN1-213ENST00000527897 PPTC7Q8NI37 304 aa17.86■□□□□ 0.45
CAPN1-213ENST00000527897 ALG1Q9BT22 464 aa17.86■□□□□ 0.45
CAPN1-213ENST00000527897 DOCK5Q9H7D0 1870 aa17.86■□□□□ 0.45
CAPN1-213ENST00000527897 SPDYE3A6NKU9 549 aa17.85■□□□□ 0.45
CAPN1-213ENST00000527897 PIK3CDO00329 1044 aa17.85■□□□□ 0.45
CAPN1-213ENST00000527897 ADD1P35611 737 aaKnown RBP17.85■□□□□ 0.45
CAPN1-213ENST00000527897 FRMPD4Q14CM0 1322 aa17.85■□□□□ 0.45
CAPN1-213ENST00000527897 NFRKBQ6P4R8 1299 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms