RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 FAM20AQ96MK3 541 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 FUCA2Q9BTY2 467 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 FRMPD4Q14CM0 1322 aa23.72■■□□□ 1.39
VPS28-208ENST00000527797 PASKQ96RG2 1323 aa23.72■■□□□ 1.39
VPS28-208ENST00000527797 IGLV3-22A0A075B6J6 115 aa23.72■■□□□ 1.39
VPS28-208ENST00000527797 PDHXO00330 501 aa23.72■■□□□ 1.39
VPS28-208ENST00000527797 ACTN4O43707 911 aaKnown RBP23.72■■□□□ 1.39
VPS28-208ENST00000527797 CEP55Q53EZ4 464 aa23.72■■□□□ 1.39
VPS28-208ENST00000527797 CABP7Q86V35 215 aa23.72■■□□□ 1.39
VPS28-208ENST00000527797 CEP57L1Q8IYX8 460 aa23.72■■□□□ 1.39
VPS28-208ENST00000527797 RASSF8Q8NHQ8 419 aa23.72■■□□□ 1.39
VPS28-208ENST00000527797 CYP2W1Q8TAV3 490 aa23.72■■□□□ 1.39
VPS28-208ENST00000527797 RMDN3Q96TC7 470 aa23.72■■□□□ 1.39
VPS28-208ENST00000527797 A1CFQ9NQ94 594 aaKnown RBP23.72■■□□□ 1.39
VPS28-208ENST00000527797 CYP39A1Q9NYL5 469 aa23.72■■□□□ 1.39
VPS28-208ENST00000527797 RBPJLQ9UBG7 517 aa23.72■■□□□ 1.39
VPS28-208ENST00000527797 COL11A1P12107 1806 aaPredicted RBP23.72■■□□□ 1.39
VPS28-208ENST00000527797 BTBD19C9JJ37 291 aa23.71■■□□□ 1.39
VPS28-208ENST00000527797 PEX10O60683 326 aa23.71■■□□□ 1.39
VPS28-208ENST00000527797 SLC25A27O95847 323 aa23.71■■□□□ 1.39
VPS28-208ENST00000527797 SLFN14P0C7P3 912 aa23.71■■□□□ 1.39
VPS28-208ENST00000527797 COPB2P35606 906 aa23.71■■□□□ 1.39
VPS28-208ENST00000527797 ARHGEF16Q5VV41 709 aa23.71■■□□□ 1.39
VPS28-208ENST00000527797 PCNX4Q63HM2 1172 aa23.71■■□□□ 1.39
VPS28-208ENST00000527797 PLA2G4DQ86XP0 818 aa23.71■■□□□ 1.39
VPS28-208ENST00000527797 KIAA1468Q9P260 1216 aa23.71■■□□□ 1.39
VPS28-208ENST00000527797 MSH4O15457 936 aa23.7■■□□□ 1.39
VPS28-208ENST00000527797 ZNF157P51786 506 aaPredicted RBP23.7■■□□□ 1.39
VPS28-208ENST00000527797 SETQ01105 290 aaPredicted RBP23.7■■□□□ 1.39
VPS28-208ENST00000527797 KARSQ15046 597 aaKnown RBP23.7■■□□□ 1.39
VPS28-208ENST00000527797 NCAPG2Q86XI2 1143 aa23.7■■□□□ 1.39
VPS28-208ENST00000527797 SMC1BQ8NDV3 1235 aa23.7■■□□□ 1.39
VPS28-208ENST00000527797 GJA10Q969M2 543 aa23.7■■□□□ 1.39
VPS28-208ENST00000527797 MXRA8Q9BRK3 442 aa23.7■■□□□ 1.39
VPS28-208ENST00000527797 MOV10L1Q9BXT6 1211 aaKnown RBP23.7■■□□□ 1.39
VPS28-208ENST00000527797 PXMP2Q9NR77 195 aa23.7■■□□□ 1.39
VPS28-208ENST00000527797 DISC1Q9NRI5 854 aa23.7■■□□□ 1.39
VPS28-208ENST00000527797 A0A0G2JMZ2 1700 aa23.7■■□□□ 1.38
VPS28-208ENST00000527797 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.7■■□□□ 1.38
VPS28-208ENST00000527797 KIF3CO14782 793 aa23.7■■□□□ 1.38
VPS28-208ENST00000527797 EIF2AK2P19525 551 aaKnown RBP23.7■■□□□ 1.38
VPS28-208ENST00000527797 TYRO3Q06418 890 aa23.7■■□□□ 1.38
VPS28-208ENST00000527797 PGM5Q15124 567 aa23.7■■□□□ 1.38
VPS28-208ENST00000527797 E2F4Q16254 413 aa23.7■■□□□ 1.38
VPS28-208ENST00000527797 RRAGBQ5VZM2 374 aa23.7■■□□□ 1.38
VPS28-208ENST00000527797 PDCD2LQ9BRP1 358 aa23.7■■□□□ 1.38
VPS28-208ENST00000527797 TXNRD2Q9NNW7 524 aa23.7■■□□□ 1.38
VPS28-208ENST00000527797 MEIS1O00470 390 aa23.69■■□□□ 1.38
VPS28-208ENST00000527797 CYP2C8P10632 490 aa23.69■■□□□ 1.38
VPS28-208ENST00000527797 KRT79Q5XKE5 535 aa23.69■■□□□ 1.38
VPS28-208ENST00000527797 SAPCD2Q86UD0 394 aa23.69■■□□□ 1.38
VPS28-208ENST00000527797 ANKRD35Q8N283 1001 aa23.69■■□□□ 1.38
VPS28-208ENST00000527797 NSUN6Q8TEA1 469 aaKnown RBP23.69■■□□□ 1.38
VPS28-208ENST00000527797 SMCR8Q8TEV9 937 aaPredicted RBP23.69■■□□□ 1.38
VPS28-208ENST00000527797 ERCC4Q92889 916 aaPredicted RBP23.69■■□□□ 1.38
VPS28-208ENST00000527797 CALML4Q96GE6 196 aa23.69■■□□□ 1.38
VPS28-208ENST00000527797 UIMC1Q96RL1 719 aa23.69■■□□□ 1.38
VPS28-208ENST00000527797 PFASO15067 1338 aa23.68■■□□□ 1.38
VPS28-208ENST00000527797 POTEMA6NI47 508 aa23.68■■□□□ 1.38
VPS28-208ENST00000527797 STAT6P42226 847 aa23.68■■□□□ 1.38
VPS28-208ENST00000527797 MDM2Q00987 491 aaPredicted RBP23.68■■□□□ 1.38
VPS28-208ENST00000527797 POSTNQ15063 836 aa23.68■■□□□ 1.38
VPS28-208ENST00000527797 RGMBQ6NW40 437 aa23.68■■□□□ 1.38
VPS28-208ENST00000527797 XRRA1Q6P2D8 792 aa23.68■■□□□ 1.38
VPS28-208ENST00000527797 NIPA1Q7RTP0 329 aa23.68■■□□□ 1.38
VPS28-208ENST00000527797 RASAL3Q86YV0 1011 aa23.68■■□□□ 1.38
VPS28-208ENST00000527797 IL31RAQ8NI17 732 aa23.68■■□□□ 1.38
VPS28-208ENST00000527797 PURBQ96QR8 312 aaKnown RBP23.68■■□□□ 1.38
VPS28-208ENST00000527797 ERCC3P19447 782 aa23.67■■□□□ 1.38
VPS28-208ENST00000527797 PNOCQ13519 176 aa23.67■■□□□ 1.38
VPS28-208ENST00000527797 ZRSR1Q15695 479 aaKnown RBP23.67■■□□□ 1.38
VPS28-208ENST00000527797 Q3C1V9 767 aa23.67■■□□□ 1.38
VPS28-208ENST00000527797 ZFP91Q96JP5 570 aaPredicted RBP23.67■■□□□ 1.38
VPS28-208ENST00000527797 MMTAG2Q9BU76 263 aaKnown RBP23.67■■□□□ 1.38
VPS28-208ENST00000527797 RBSNQ9H1K0 784 aa23.67■■□□□ 1.38
VPS28-208ENST00000527797 UBIAD1Q9Y5Z9 338 aa23.67■■□□□ 1.38
VPS28-208ENST00000527797 RBBP6Q7Z6E9 1792 aaKnown RBP23.67■■□□□ 1.38
VPS28-208ENST00000527797 TRPM7Q96QT4 1865 aa23.67■■□□□ 1.38
VPS28-208ENST00000527797 FOXN1O15353 648 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 BCRP11274 1271 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 MYCLP12524 364 aaPredicted RBP23.66■■□□□ 1.38
VPS28-208ENST00000527797 ITGB5P18084 799 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 L1TD1Q5T7N2 865 aaKnown RBP23.66■■□□□ 1.38
VPS28-208ENST00000527797 FAM43AQ8N2R8 423 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 PAGE5Q96GU1 130 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 TESPA1A2RU30 521 aaPredicted RBP23.66■■□□□ 1.38
VPS28-208ENST00000527797 NR3C2P08235 984 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 CCND2P30279 289 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 MRE11P49959 708 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 MRPS9P82933 396 aaKnown RBP23.66■■□□□ 1.38
VPS28-208ENST00000527797 PDXDC2PQ6P474 469 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 SH3RF1Q7Z6J0 888 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 SNX29Q8TEQ0 813 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 SLC5A5Q92911 643 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 PLIN2Q99541 437 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 ZNF577Q9BSK1 485 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 CUEDC2Q9H467 287 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 GRPEL1Q9HAV7 217 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 JADE2Q9NQC1 790 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 TUBE1Q9UJT0 475 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms