RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 SIGLEC10Q96LC7 697 aa7.16□□□□□ -1.26
CD44-223ENST00000526553 IPO9Q96P70 1041 aaKnown RBP7.16□□□□□ -1.26
CD44-223ENST00000526553 LNPKQ9C0E8 428 aa7.16□□□□□ -1.26
CD44-223ENST00000526553 COA3Q9Y2R0 106 aaPredicted RBP7.16□□□□□ -1.26
CD44-223ENST00000526553 PCDHA5Q9Y5H7 936 aa7.16□□□□□ -1.26
CD44-223ENST00000526553 IRS4O14654 1257 aaPredicted RBP7.15□□□□□ -1.26
CD44-223ENST00000526553 LINC00310P59036 64 aa7.15□□□□□ -1.26
CD44-223ENST00000526553 BMS1Q14692 1282 aaKnown RBP7.15□□□□□ -1.26
CD44-223ENST00000526553 FOXB2Q5VYV0 432 aa7.15□□□□□ -1.26
CD44-223ENST00000526553 MAMDC2Q7Z304 686 aaPredicted RBP7.15□□□□□ -1.26
CD44-223ENST00000526553 IGDCC3Q8IVU1 814 aa7.15□□□□□ -1.26
CD44-223ENST00000526553 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.15□□□□□ -1.26
CD44-223ENST00000526553 THAP3Q8WTV1 239 aaPredicted RBP7.15□□□□□ -1.26
CD44-223ENST00000526553 SEC14L1Q92503 715 aa7.15□□□□□ -1.26
CD44-223ENST00000526553 EXOC2Q96KP1 924 aa7.15□□□□□ -1.26
CD44-223ENST00000526553 TOX2Q96NM4 488 aa7.15□□□□□ -1.26
CD44-223ENST00000526553 RNF38Q9H0F5 515 aa7.15□□□□□ -1.26
CD44-223ENST00000526553 AP5M1Q9H0R1 490 aa7.15□□□□□ -1.26
CD44-223ENST00000526553 RXFP1Q9HBX9 757 aa7.15□□□□□ -1.26
CD44-223ENST00000526553 CLDND1Q9NY35 253 aa7.15□□□□□ -1.26
CD44-223ENST00000526553 NPIPB6E9PJ23 425 aa7.14□□□□□ -1.27
CD44-223ENST00000526553 MSCO60682 206 aa7.14□□□□□ -1.27
CD44-223ENST00000526553 PFKLP17858 780 aa7.14□□□□□ -1.27
CD44-223ENST00000526553 GPR85P60893 370 aa7.14□□□□□ -1.27
CD44-223ENST00000526553 TARBP2Q15633 366 aaKnown RBP7.14□□□□□ -1.27
CD44-223ENST00000526553 KIZQ2M2Z5 673 aa7.14□□□□□ -1.27
CD44-223ENST00000526553 C2orf27AQ580R0 203 aa7.14□□□□□ -1.27
CD44-223ENST00000526553 FAM209AQ5JX71 171 aa7.14□□□□□ -1.27
CD44-223ENST00000526553 KCNT2Q6UVM3 1135 aa7.14□□□□□ -1.27
CD44-223ENST00000526553 LBX2Q6XYB7 198 aa7.14□□□□□ -1.27
CD44-223ENST00000526553 ALG3Q92685 438 aa7.14□□□□□ -1.27
CD44-223ENST00000526553 KISS1RQ969F8 398 aaPredicted RBP7.14□□□□□ -1.27
CD44-223ENST00000526553 CHAMP1Q96JM3 812 aa7.14□□□□□ -1.27
CD44-223ENST00000526553 DHRS4Q9BTZ2 278 aa7.14□□□□□ -1.27
CD44-223ENST00000526553 CDIP1Q9H305 208 aa7.14□□□□□ -1.27
CD44-223ENST00000526553 EPB41L1Q9H4G0 881 aa7.14□□□□□ -1.27
CD44-223ENST00000526553 IRAK3Q9Y616 596 aa7.14□□□□□ -1.27
CD44-223ENST00000526553 BLACEA4D250 179 aa7.13□□□□□ -1.27
CD44-223ENST00000526553 C6orf222P0C671 652 aaPredicted RBP7.13□□□□□ -1.27
CD44-223ENST00000526553 IGFBP6P24592 240 aaPredicted RBP7.13□□□□□ -1.27
CD44-223ENST00000526553 CHRNA2Q15822 529 aa7.13□□□□□ -1.27
CD44-223ENST00000526553 IFNL3Q8IZI9 196 aa7.13□□□□□ -1.27
CD44-223ENST00000526553 ZSWIM2Q8NEG5 633 aa7.13□□□□□ -1.27
CD44-223ENST00000526553 PTPRN2Q92932 1015 aa7.13□□□□□ -1.27
CD44-223ENST00000526553 MRFAP1L1Q96HT8 127 aa7.13□□□□□ -1.27
CD44-223ENST00000526553 ZSWIM4Q9H7M6 989 aa7.13□□□□□ -1.27
CD44-223ENST00000526553 CNOT6Q9ULM6 557 aaKnown RBP7.13□□□□□ -1.27
CD44-223ENST00000526553 PLA2G2DQ9UNK4 145 aa7.13□□□□□ -1.27
CD44-223ENST00000526553 MRPS23Q9Y3D9 190 aaKnown RBP7.13□□□□□ -1.27
CD44-223ENST00000526553 SIT1Q9Y3P8 196 aa7.13□□□□□ -1.27
CD44-223ENST00000526553 CCDC163A0A0D9SF12 145 aa7.12□□□□□ -1.27
CD44-223ENST00000526553 RFXAPO00287 272 aa7.12□□□□□ -1.27
CD44-223ENST00000526553 AQP7O14520 342 aa7.12□□□□□ -1.27
CD44-223ENST00000526553 SGSM2O43147 1006 aa7.12□□□□□ -1.27
CD44-223ENST00000526553 BUB1BO60566 1050 aaPredicted RBP7.12□□□□□ -1.27
CD44-223ENST00000526553 ASGR2P07307 311 aa7.12□□□□□ -1.27
CD44-223ENST00000526553 NCAM1P13591 858 aa7.12□□□□□ -1.27
CD44-223ENST00000526553 JAG1P78504 1218 aa7.12□□□□□ -1.27
CD44-223ENST00000526553 CCDC144BQ3MJ40 725 aa7.12□□□□□ -1.27
CD44-223ENST00000526553 EMC4Q5J8M3 183 aa7.12□□□□□ -1.27
CD44-223ENST00000526553 CPA5Q8WXQ8 436 aa7.12□□□□□ -1.27
CD44-223ENST00000526553 ZNF652Q9Y2D9 606 aa7.12□□□□□ -1.27
CD44-223ENST00000526553 KCTD3Q9Y597 815 aa7.12□□□□□ -1.27
CD44-223ENST00000526553 ASXL2Q76L83 1435 aa7.11□□□□□ -1.27
CD44-223ENST00000526553 DGKIO75912 1065 aa7.11□□□□□ -1.27
CD44-223ENST00000526553 GRK2P25098 689 aa7.11□□□□□ -1.27
CD44-223ENST00000526553 PMLP29590 882 aa7.11□□□□□ -1.27
CD44-223ENST00000526553 GRK3P35626 688 aa7.11□□□□□ -1.27
CD44-223ENST00000526553 NCKAP1LP55160 1127 aa7.11□□□□□ -1.27
CD44-223ENST00000526553 GABREP78334 506 aa7.11□□□□□ -1.27
CD44-223ENST00000526553 SSPNQ14714 243 aa7.11□□□□□ -1.27
CD44-223ENST00000526553 ZNF385BQ569K4 471 aa7.11□□□□□ -1.27
CD44-223ENST00000526553 CIAPIN1Q6FI81 312 aa7.11□□□□□ -1.27
CD44-223ENST00000526553 AMIGO3Q86WK7 504 aa7.11□□□□□ -1.27
CD44-223ENST00000526553 C1QL4Q86Z23 238 aa7.11□□□□□ -1.27
CD44-223ENST00000526553 LRRC56Q8IYG6 542 aaPredicted RBP7.11□□□□□ -1.27
CD44-223ENST00000526553 TMEFF1Q8IYR6 380 aa7.11□□□□□ -1.27
CD44-223ENST00000526553 LILRB2Q8N423 598 aa7.11□□□□□ -1.27
CD44-223ENST00000526553 PI3P19957 117 aa7.1□□□□□ -1.27
CD44-223ENST00000526553 CFPP27918 469 aa7.1□□□□□ -1.27
CD44-223ENST00000526553 MIB1Q86YT6 1006 aa7.1□□□□□ -1.27
CD44-223ENST00000526553 ZSCAN18Q8TBC5 510 aaPredicted RBP7.1□□□□□ -1.27
CD44-223ENST00000526553 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.1□□□□□ -1.27
CD44-223ENST00000526553 PPARGC1AQ9UBK2 798 aaKnown RBP7.1□□□□□ -1.27
CD44-223ENST00000526553 PALD1Q9ULE6 856 aa7.1□□□□□ -1.27
CD44-223ENST00000526553 PTCH2Q9Y6C5 1203 aa7.1□□□□□ -1.27
CD44-223ENST00000526553 HGSO14964 777 aaPredicted RBP7.09□□□□□ -1.27
CD44-223ENST00000526553 TADA3O75528 432 aa7.09□□□□□ -1.27
CD44-223ENST00000526553 NAT1P18440 290 aa7.09□□□□□ -1.27
CD44-223ENST00000526553 KRTAP19-4Q3LI73 84 aa7.09□□□□□ -1.27
CD44-223ENST00000526553 STEAP3Q658P3 488 aa7.09□□□□□ -1.27
CD44-223ENST00000526553 CYP4F22Q6NT55 531 aa7.09□□□□□ -1.27
CD44-223ENST00000526553 FAM129CQ86XR2 697 aa7.09□□□□□ -1.27
CD44-223ENST00000526553 ALG1Q9BT22 464 aa7.09□□□□□ -1.27
CD44-223ENST00000526553 BCAS3Q9H6U6 928 aa7.09□□□□□ -1.27
CD44-223ENST00000526553 EPB41L4AQ9HCS5 686 aaPredicted RBP7.09□□□□□ -1.27
CD44-223ENST00000526553 TRAF6Q9Y4K3 522 aa7.09□□□□□ -1.27
CD44-223ENST00000526553 KRIT1O00522 736 aa7.08□□□□□ -1.28
CD44-223ENST00000526553 NUAK1O60285 661 aa7.08□□□□□ -1.28
CD44-223ENST00000526553 MAFKO60675 156 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms