RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 PIGOQ8TEQ8 1089 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 ST7Q9NRC1 585 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 STK32BQ9NY57 414 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 SAMD15Q9P1V8 674 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 C1orf167Q5SNV9 1468 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 CCDC151A5D8V7 595 aa12.83□□□□□ -0.35
SYNPO-204ENST00000519664 NKX1-1Q15270 411 aaPredicted RBP12.83□□□□□ -0.35
SYNPO-204ENST00000519664 ARL6IP4Q66PJ3 421 aaKnown RBP12.83□□□□□ -0.35
SYNPO-204ENST00000519664 DCUN1D2Q6PH85 259 aa12.83□□□□□ -0.35
SYNPO-204ENST00000519664 SLFN12Q8IYM2 578 aa12.83□□□□□ -0.35
SYNPO-204ENST00000519664 PSMD1Q99460 953 aa12.83□□□□□ -0.35
SYNPO-204ENST00000519664 COL3A1P02461 1466 aaPredicted RBP12.83□□□□□ -0.36
SYNPO-204ENST00000519664 DLC1Q96QB1 1528 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 LAD1O00515 517 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 KRT19P08727 400 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 FCER1AP12319 257 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 CCDC63Q8NA47 563 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 NSRP1Q9H0G5 558 aaKnown RBP12.83□□□□□ -0.36
SYNPO-204ENST00000519664 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.83□□□□□ -0.36
SYNPO-204ENST00000519664 JRKLQ9Y4A0 524 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 ZBTB22O15209 634 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 PLA2G4BP0C869 781 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 KIF11P52732 1056 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 STRN3Q13033 797 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 ICE2Q659A1 982 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 KRT26Q7Z3Y9 468 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 PHLDB2Q86SQ0 1253 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 ABHD10Q9NUJ1 306 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 AGTPBP1Q9UPW5 1226 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 COL15A1P39059 1388 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 E9PMD0 336 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 GFPT2O94808 682 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 POTEDQ86YR6 584 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 GSPT2Q8IYD1 628 aaKnown RBP12.83□□□□□ -0.36
SYNPO-204ENST00000519664 NLGN1Q8N2Q7 840 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 ZNF408Q9H9D4 720 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 NARFQ9UHQ1 456 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 CCPG1Q9ULG6 757 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 ADGRG1Q9Y653 693 aa12.83□□□□□ -0.36
SYNPO-204ENST00000519664 HEXIM1O94992 359 aaKnown RBP12.82□□□□□ -0.36
SYNPO-204ENST00000519664 TDP2O95551 362 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 MESDQ14696 234 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 ZNF579Q8NAF0 562 aaKnown RBP12.82□□□□□ -0.36
SYNPO-204ENST00000519664 CCDC17Q96LX7 622 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 CHP1Q99653 195 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 CUEDC2Q9H467 287 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 UTYO14607 1347 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 STK36Q9NRP7 1315 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 TRPC3Q13507 836 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 CTTNQ14247 550 aaKnown RBP12.82□□□□□ -0.36
SYNPO-204ENST00000519664 PNMA8AQ86V59 439 aaPredicted RBP12.82□□□□□ -0.36
SYNPO-204ENST00000519664 ENGASEQ8NFI3 743 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.82□□□□□ -0.36
SYNPO-204ENST00000519664 SUGCTQ9HAC7 445 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 TNS3Q68CZ2 1445 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 USP17L10C9JJH3 530 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 ZBED4O75132 1171 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 CCT5P48643 541 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 LIG3P49916 1009 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 CASP8Q14790 479 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 CCDC6Q16204 474 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 RUFY4Q6ZNE9 571 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 NIM1KQ8IY84 436 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 ANKRD42Q8N9B4 389 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 NSUN4Q96CB9 384 aaKnown RBP12.82□□□□□ -0.36
SYNPO-204ENST00000519664 TSKSQ9UJT2 592 aa12.82□□□□□ -0.36
SYNPO-204ENST00000519664 RRP15Q9Y3B9 282 aaKnown RBP12.81□□□□□ -0.36
SYNPO-204ENST00000519664 NOP56O00567 594 aaKnown RBP12.81□□□□□ -0.36
SYNPO-204ENST00000519664 RNF40O75150 1001 aa12.81□□□□□ -0.36
SYNPO-204ENST00000519664 MXRA7P84157 204 aa12.81□□□□□ -0.36
SYNPO-204ENST00000519664 STMN4Q9H169 189 aaPredicted RBP12.81□□□□□ -0.36
SYNPO-204ENST00000519664 PTPN22Q9Y2R2 807 aa12.81□□□□□ -0.36
SYNPO-204ENST00000519664 RFX7Q2KHR2 1363 aa12.81□□□□□ -0.36
SYNPO-204ENST00000519664 MMP10P09238 476 aa12.81□□□□□ -0.36
SYNPO-204ENST00000519664 BMP3P12645 472 aa12.81□□□□□ -0.36
SYNPO-204ENST00000519664 ADCY1Q08828 1119 aa12.81□□□□□ -0.36
SYNPO-204ENST00000519664 CDC37Q16543 378 aaPredicted RBP12.81□□□□□ -0.36
SYNPO-204ENST00000519664 SYCE1Q8N0S2 351 aa12.81□□□□□ -0.36
SYNPO-204ENST00000519664 GLG1Q92896 1179 aa12.81□□□□□ -0.36
SYNPO-204ENST00000519664 NKIRAS1Q9NYS0 192 aa12.81□□□□□ -0.36
SYNPO-204ENST00000519664 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.81□□□□□ -0.36
SYNPO-204ENST00000519664 EXOC7Q9UPT5 735 aa12.81□□□□□ -0.36
SYNPO-204ENST00000519664 GH2P01242 217 aa12.81□□□□□ -0.36
SYNPO-204ENST00000519664 FAM186BQ8IYM0 893 aa12.81□□□□□ -0.36
SYNPO-204ENST00000519664 PCDHA13Q9Y5I0 950 aa12.81□□□□□ -0.36
SYNPO-204ENST00000519664 FXR1P51114 621 aaKnown RBP eCLIP12.8□□□□□ -0.36
SYNPO-204ENST00000519664 ARHGEF16Q5VV41 709 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 ZNF577Q9BSK1 485 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 AP1M1Q9BXS5 423 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 TDRD3Q9H7E2 651 aaKnown RBP12.8□□□□□ -0.36
SYNPO-204ENST00000519664 MLXIPQ9HAP2 919 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.8□□□□□ -0.36
SYNPO-204ENST00000519664 BCS1LQ9Y276 419 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 WDR19Q8NEZ3 1342 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 SEPT2Q15019 361 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 SEPT12Q8IYM1 358 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 ZNF34Q8IZ26 560 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 PAGR1Q9BTK6 254 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 CAPS2Q9BXY5 557 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 STK17AQ9UEE5 414 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms