RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 PCIF1Q9H4Z3 704 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 C1orf112Q9NSG2 853 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 PTPN22Q9Y2R2 807 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 PCK1P35558 622 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 LIG4P49917 911 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 FYB2Q5VWT5 728 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 TMEM47Q9BQJ4 181 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 TACO1Q9BSH4 297 aaKnown RBP13.86□□□□□ -0.19
USP53-209ENST00000514665 PPP1R12CQ9BZL4 782 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 THAP9Q9H5L6 903 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 SUGCTQ9HAC7 445 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 PLCB1Q9NQ66 1216 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 HOMER3Q9NSC5 361 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 CCPG1Q9ULG6 757 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 STK38LQ9Y2H1 464 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 FAM205CA6NFA0 338 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 AFPP02771 609 aaKnown RBP13.85□□□□□ -0.19
USP53-209ENST00000514665 MYL1P05976 194 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 PLA2G4BP0C869 781 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 CACNB3P54284 484 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 SNAP25P60880 206 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 ATP11AP98196 1134 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 GKAP1Q5VSY0 366 aaPredicted RBP13.85□□□□□ -0.19
USP53-209ENST00000514665 ARHGEF16Q5VV41 709 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 OTUD6AQ7L8S5 288 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 PPFIBP2Q8ND30 876 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 DCP1AQ9NPI6 582 aaPredicted RBP13.85□□□□□ -0.19
USP53-209ENST00000514665 ADGRB3O60242 1522 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 GCFC2P16383 781 aaKnown RBP13.85□□□□□ -0.19
USP53-209ENST00000514665 TERF2Q15554 542 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 BSPRYQ5W0U4 402 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 ZNF579Q8NAF0 562 aaKnown RBP13.85□□□□□ -0.19
USP53-209ENST00000514665 ALDH8A1Q9H2A2 487 aaPredicted RBP13.85□□□□□ -0.19
USP53-209ENST00000514665 KANSL2Q9H9L4 492 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 ATP8A1Q9Y2Q0 1164 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 PCDHA13Q9Y5I0 950 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 EPHB4P54760 987 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 PLTPP55058 493 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 MCTP2Q6DN12 878 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 CASC4Q6P4E1 433 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 METTL16Q86W50 562 aaKnown RBP13.85□□□□□ -0.19
USP53-209ENST00000514665 CCDC89Q8N998 374 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 POMGNT1Q8WZA1 660 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 BHMT2Q9H2M3 363 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 ABHD10Q9NUJ1 306 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 PARP2Q9UGN5 583 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 ARHGEF40Q8TER5 1519 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 STK36Q9NRP7 1315 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 PRPF6O94906 941 aaKnown RBP13.85□□□□□ -0.19
USP53-209ENST00000514665 PPP2R5EQ16537 467 aa13.85□□□□□ -0.19
USP53-209ENST00000514665 BZW2Q9Y6E2 419 aaKnown RBP13.85□□□□□ -0.19
USP53-209ENST00000514665 USP31Q70CQ4 1352 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.84□□□□□ -0.19
USP53-209ENST00000514665 SFI1A8K8P3 1242 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 HOXA13P31271 388 aaPredicted RBP13.84□□□□□ -0.19
USP53-209ENST00000514665 ADCY1Q08828 1119 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 PFKFB3Q16875 520 aaPredicted RBP13.84□□□□□ -0.19
USP53-209ENST00000514665 USP49Q70CQ1 688 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 SGMS1Q86VZ5 419 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 RIPOR2Q9Y4F9 1068 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 NRKQ7Z2Y5 1582 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 PALLDQ8WX93 1383 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 USP42Q9H9J4 1324 aaKnown RBP13.84□□□□□ -0.19
USP53-209ENST00000514665 LRRIQ4A6NIV6 560 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 BBOX1O75936 387 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 PSMC4P43686 418 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 IFT88Q13099 833 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 KAZNQ674X7 775 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 SUPT20HQ8NEM7 779 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 MCUR1Q96AQ8 359 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 RRP15Q9Y3B9 282 aaKnown RBP13.84□□□□□ -0.19
USP53-209ENST00000514665 ADGRG1Q9Y653 693 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 ZNF335Q9H4Z2 1342 aaPredicted RBP13.84□□□□□ -0.19
USP53-209ENST00000514665 A0A1B0GUA9 196 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 HNRNPDLO14979 420 aaKnown RBP13.84□□□□□ -0.19
USP53-209ENST00000514665 THAP12O43422 761 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 CYP19A1P11511 503 aaPredicted RBP13.84□□□□□ -0.19
USP53-209ENST00000514665 PDE6CP51160 858 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 MYL7Q01449 175 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 NEDD9Q14511 834 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 CEP128Q6ZU80 1094 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 WDR24Q96S15 920 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 ZNF577Q9BSK1 485 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 ZNF408Q9H9D4 720 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 GCNT4Q9P109 453 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 ZNF148Q9UQR1 794 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 DAAM1Q9Y4D1 1078 aa13.84□□□□□ -0.19
USP53-209ENST00000514665 TTC26A0AVF1 554 aa13.83□□□□□ -0.19
USP53-209ENST00000514665 LGALS16A8MUM7 142 aa13.83□□□□□ -0.19
USP53-209ENST00000514665 PGRMC1O00264 195 aaKnown RBP13.83□□□□□ -0.19
USP53-209ENST00000514665 PSMC2P35998 433 aaKnown RBP13.83□□□□□ -0.19
USP53-209ENST00000514665 ADAM21Q9UKJ8 722 aa13.83□□□□□ -0.19
USP53-209ENST00000514665 PPEF1O14829 653 aaPredicted RBP13.83□□□□□ -0.2
USP53-209ENST00000514665 DAPK3O43293 454 aa13.83□□□□□ -0.2
USP53-209ENST00000514665 HNRNPH2P55795 449 aaKnown RBP13.83□□□□□ -0.2
USP53-209ENST00000514665 ALX1Q15699 326 aa13.83□□□□□ -0.2
USP53-209ENST00000514665 TXNRD1Q16881 649 aa13.83□□□□□ -0.2
USP53-209ENST00000514665 CC2D1AQ6P1N0 951 aaPredicted RBP13.83□□□□□ -0.2
USP53-209ENST00000514665 ALKBH5Q6P6C2 394 aaKnown RBP13.83□□□□□ -0.2
USP53-209ENST00000514665 EXOC4Q96A65 974 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms