RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 PPP1R13BQ96KQ4 1090 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 TBC1D2Q9BYX2 928 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 DCDC2CA8MYV0 355 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 OPLAHO14841 1288 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 THAP12O43422 761 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 GUCA1CO95843 209 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 HABP4Q5JVS0 413 aaKnown RBP9.67□□□□□ -0.86
VCAN-208ENST00000512590 KRT80Q6KB66 452 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 KLC3Q6P597 504 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 DDX42Q86XP3 938 aaKnown RBP eCLIP9.67□□□□□ -0.86
VCAN-208ENST00000512590 UCMAQ8WVF2 138 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 FAM167BQ9BTA0 163 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 CAPN10Q9HC96 672 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 SLAIN2Q9P270 581 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 GPATCH11Q8N954 259 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 CCHCR1Q8TD31 782 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 GRK7Q8WTQ7 553 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 NCLNQ969V3 563 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 NFKBIZQ9BYH8 718 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 PAPOLBQ9NRJ5 636 aaKnown RBP9.67□□□□□ -0.86
VCAN-208ENST00000512590 NDFIP2Q9NV92 336 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 NDUFB9Q9Y6M9 179 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 HFM1A2PYH4 1435 aa9.67□□□□□ -0.86
VCAN-208ENST00000512590 MEI4A8MW99 385 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 HNRNPDLO14979 420 aaKnown RBP9.66□□□□□ -0.86
VCAN-208ENST00000512590 PRDM1O75626 825 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 EPB42P16452 691 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 RPS8P62241 208 aaKnown RBP9.66□□□□□ -0.86
VCAN-208ENST00000512590 TMEM132BQ14DG7 1078 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 PDXDC1Q6P996 788 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 ARHGEF18Q6ZSZ5 1173 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 NLRP4Q96MN2 994 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 ACAP3Q96P50 834 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 TLK1Q9UKI8 766 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 TNNQ9UQP3 1299 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 HDAC4P56524 1084 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 TFCP2Q12800 502 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 MAPK8IP2Q13387 824 aaPredicted RBP9.66□□□□□ -0.86
VCAN-208ENST00000512590 OR6B2Q6IFH4 312 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 APOBEC3FQ8IUX4 373 aaKnown RBP9.66□□□□□ -0.86
VCAN-208ENST00000512590 HEXIM2Q96MH2 286 aaKnown RBP9.66□□□□□ -0.86
VCAN-208ENST00000512590 TRERF1Q96PN7 1200 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 GALNT8Q9NY28 637 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 SLC25A13Q9UJS0 675 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 ZMYM3Q14202 1370 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 PAMP19021 973 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 INAQ16352 499 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 AOC3Q16853 763 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 TAS2R42Q7RTR8 314 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 LRRC47Q8N1G4 583 aaKnown RBP9.66□□□□□ -0.86
VCAN-208ENST00000512590 CAMKK1Q8N5S9 505 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 DENND4BO75064 1496 aaPredicted RBP9.66□□□□□ -0.86
VCAN-208ENST00000512590 TADA2AO75478 443 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 CCNB2O95067 398 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 MAP4P27816 1152 aaKnown RBP9.66□□□□□ -0.86
VCAN-208ENST00000512590 MAPK9P45984 424 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 AK2P54819 239 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 R3HDM1Q15032 1099 aaKnown RBP9.66□□□□□ -0.86
VCAN-208ENST00000512590 CCDC141Q6ZP82 1450 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 IFT20Q8IY31 132 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 SPICE1Q8N0Z3 855 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 EGFL8Q99944 293 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 KAT6BQ8WYB5 2073 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 HGSO14964 777 aaPredicted RBP9.66□□□□□ -0.86
VCAN-208ENST00000512590 NDUFS2O75306 463 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 AP1G2O75843 785 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 PSAPP07602 524 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 ERVK-10P10266 1014 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 BTDP43251 543 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 PPP2R5BQ15173 497 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 MTERF2Q49AM1 385 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 CC2D2BQ6DHV5 1058 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 MIGA2Q7L4E1 593 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 GPBP1Q86WP2 473 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 CCDC127Q96BQ5 260 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 SPON2Q9BUD6 331 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 PALMDQ9NP74 551 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 TOPORSQ9NS56 1045 aaPredicted RBP9.66□□□□□ -0.86
VCAN-208ENST00000512590 PCDHB7Q9Y5E2 793 aa9.66□□□□□ -0.86
VCAN-208ENST00000512590 SYNCRIPO60506 623 aaKnown RBP9.65□□□□□ -0.86
VCAN-208ENST00000512590 TROVE2P10155 538 aaKnown RBP eCLIP9.65□□□□□ -0.86
VCAN-208ENST00000512590 SCG2P13521 617 aa9.65□□□□□ -0.86
VCAN-208ENST00000512590 PAPOLAP51003 745 aaKnown RBP9.65□□□□□ -0.86
VCAN-208ENST00000512590 FCGRTP55899 365 aa9.65□□□□□ -0.86
VCAN-208ENST00000512590 TFAP4Q01664 338 aa9.65□□□□□ -0.86
VCAN-208ENST00000512590 NOL9Q5SY16 702 aaKnown RBP9.65□□□□□ -0.86
VCAN-208ENST00000512590 VSIG1Q86XK7 387 aa9.65□□□□□ -0.86
VCAN-208ENST00000512590 SRRM1Q8IYB3 904 aaKnown RBP9.65□□□□□ -0.86
VCAN-208ENST00000512590 OTUD5Q96G74 571 aa9.65□□□□□ -0.86
VCAN-208ENST00000512590 POLR3CQ9BUI4 534 aaPredicted RBP9.65□□□□□ -0.86
VCAN-208ENST00000512590 IGFLR1Q9H665 355 aa9.65□□□□□ -0.86
VCAN-208ENST00000512590 BSDC1Q9NW68 430 aaPredicted RBP9.65□□□□□ -0.86
VCAN-208ENST00000512590 TSR3Q9UJK0 312 aaKnown RBP9.65□□□□□ -0.86
VCAN-208ENST00000512590 V9GY48 417 aaPredicted RBP9.65□□□□□ -0.86
VCAN-208ENST00000512590 GRIN2BQ13224 1484 aa9.65□□□□□ -0.86
VCAN-208ENST00000512590 TRAPPC3O43617 180 aa9.65□□□□□ -0.86
VCAN-208ENST00000512590 HIRAP54198 1017 aaPredicted RBP9.65□□□□□ -0.86
VCAN-208ENST00000512590 REXO1Q8N1G1 1221 aaKnown RBP9.65□□□□□ -0.86
VCAN-208ENST00000512590 C10orf53Q8N6V4 93 aa9.65□□□□□ -0.86
VCAN-208ENST00000512590 ARHGAP9Q9BRR9 750 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms