RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 CNTNAP3BQ96NU0 1288 aa10.91□□□□□ -0.66
NUP54-211ENST00000512151 CNTNAP3Q9BZ76 1288 aa10.91□□□□□ -0.66
NUP54-211ENST00000512151 NOP58Q9Y2X3 529 aaKnown RBP10.91□□□□□ -0.66
NUP54-211ENST00000512151 ACACBO00763 2458 aa10.91□□□□□ -0.66
NUP54-211ENST00000512151 TMEM232C9JQI7 657 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 NCK2O43639 380 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 KDM4AO75164 1064 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 CSPG5O95196 566 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 EYA4O95677 639 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 LINC00271P0C7V0 271 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 ALDH5A1P51649 535 aaPredicted RBP10.9□□□□□ -0.66
NUP54-211ENST00000512151 ATP8B2P98198 1209 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 ADAM15Q13444 863 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 TKFCQ3LXA3 575 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 NSMFQ6X4W1 530 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 SESTD1Q86VW0 696 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 DBF4BQ8NFT6 615 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 RMDN1Q96DB5 314 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 OSBPL7Q9BZF2 842 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 CLEC1BQ9P126 229 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 ZNF292O60281 2723 aa10.9□□□□□ -0.66
NUP54-211ENST00000512151 RALGAPA2Q2PPJ7 1873 aa10.9□□□□□ -0.67
NUP54-211ENST00000512151 GOLIM4O00461 696 aa10.9□□□□□ -0.67
NUP54-211ENST00000512151 KPNA6O60684 536 aa10.9□□□□□ -0.67
NUP54-211ENST00000512151 ARIH2O95376 493 aa10.9□□□□□ -0.67
NUP54-211ENST00000512151 PARNO95453 639 aaKnown RBP10.9□□□□□ -0.67
NUP54-211ENST00000512151 AMHP03971 560 aa10.9□□□□□ -0.67
NUP54-211ENST00000512151 BMP3P12645 472 aa10.9□□□□□ -0.67
NUP54-211ENST00000512151 RRP1P56182 461 aaKnown RBP10.9□□□□□ -0.67
NUP54-211ENST00000512151 ZNF200P98182 395 aaPredicted RBP10.9□□□□□ -0.67
NUP54-211ENST00000512151 BAATQ14032 418 aaPredicted RBP10.9□□□□□ -0.67
NUP54-211ENST00000512151 HIC1Q14526 733 aa10.9□□□□□ -0.67
NUP54-211ENST00000512151 SLFN13Q68D06 897 aa10.9□□□□□ -0.67
NUP54-211ENST00000512151 AACSQ86V21 672 aa10.9□□□□□ -0.67
NUP54-211ENST00000512151 TRMT2AQ8IZ69 625 aaKnown RBP10.9□□□□□ -0.67
NUP54-211ENST00000512151 MKL1Q969V6 931 aa10.9□□□□□ -0.67
NUP54-211ENST00000512151 CEP95Q96GE4 821 aa10.9□□□□□ -0.67
NUP54-211ENST00000512151 YME1L1Q96TA2 773 aa10.9□□□□□ -0.67
NUP54-211ENST00000512151 INCENPQ9NQS7 918 aa10.9□□□□□ -0.67
NUP54-211ENST00000512151 BAHCC1Q9P281 2608 aa10.89□□□□□ -0.67
NUP54-211ENST00000512151 UPP2O95045 317 aa10.89□□□□□ -0.67
NUP54-211ENST00000512151 ADD2P35612 726 aa10.89□□□□□ -0.67
NUP54-211ENST00000512151 CAMK1Q14012 370 aa10.89□□□□□ -0.67
NUP54-211ENST00000512151 PPP2R5BQ15173 497 aa10.89□□□□□ -0.67
NUP54-211ENST00000512151 TTF1Q15361 905 aaPredicted RBP10.89□□□□□ -0.67
NUP54-211ENST00000512151 RASGRP2Q7LDG7 609 aa10.89□□□□□ -0.67
NUP54-211ENST00000512151 RPAP2Q8IXW5 612 aaPredicted RBP10.89□□□□□ -0.67
NUP54-211ENST00000512151 TMEM105Q8N8V8 129 aa10.89□□□□□ -0.67
NUP54-211ENST00000512151 SMRP1Q8NCR6 262 aa10.89□□□□□ -0.67
NUP54-211ENST00000512151 GMCL1P1Q8NEA9 526 aa10.89□□□□□ -0.67
NUP54-211ENST00000512151 AFG1LQ8WV93 481 aa10.89□□□□□ -0.67
NUP54-211ENST00000512151 NKD2Q969F2 451 aaPredicted RBP10.89□□□□□ -0.67
NUP54-211ENST00000512151 C1orf115Q9H7X2 142 aa10.89□□□□□ -0.67
NUP54-211ENST00000512151 HDAC6Q9UBN7 1215 aa10.89□□□□□ -0.67
NUP54-211ENST00000512151 GTF2IRD1Q9UHL9 959 aa10.89□□□□□ -0.67
NUP54-211ENST00000512151 CEP250Q9BV73 2442 aa10.88□□□□□ -0.67
NUP54-211ENST00000512151 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.88□□□□□ -0.67
NUP54-211ENST00000512151 NFIBO00712 420 aa10.88□□□□□ -0.67
NUP54-211ENST00000512151 FDX1P10109 184 aa10.88□□□□□ -0.67
NUP54-211ENST00000512151 CTNNB1P35222 781 aa10.88□□□□□ -0.67
NUP54-211ENST00000512151 NDUFV1P49821 464 aa10.88□□□□□ -0.67
NUP54-211ENST00000512151 RARSP54136 660 aaKnown RBP10.88□□□□□ -0.67
NUP54-211ENST00000512151 BRDTQ58F21 947 aaPredicted RBP10.88□□□□□ -0.67
NUP54-211ENST00000512151 ADGRD2Q7Z7M1 963 aa10.88□□□□□ -0.67
NUP54-211ENST00000512151 STAG1Q8WVM7 1258 aa10.88□□□□□ -0.67
NUP54-211ENST00000512151 ARHGAP45Q92619 1136 aa10.88□□□□□ -0.67
NUP54-211ENST00000512151 RAD50Q92878 1312 aa10.88□□□□□ -0.67
NUP54-211ENST00000512151 TOP1MTQ969P6 601 aa10.88□□□□□ -0.67
NUP54-211ENST00000512151 RPGRIP1Q96KN7 1286 aa10.88□□□□□ -0.67
NUP54-211ENST00000512151 RIPOR3Q96MK2 946 aa10.88□□□□□ -0.67
NUP54-211ENST00000512151 DNAJC2Q99543 621 aaKnown RBP10.88□□□□□ -0.67
NUP54-211ENST00000512151 MTMR4Q9NYA4 1195 aa10.88□□□□□ -0.67
NUP54-211ENST00000512151 USP15Q9Y4E8 981 aaPredicted RBP10.88□□□□□ -0.67
NUP54-211ENST00000512151 SLC4A4Q9Y6R1 1079 aa10.88□□□□□ -0.67
NUP54-211ENST00000512151 SPTBN2O15020 2390 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 VPS13AQ96RL7 3174 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 C5orf67F2Z3F1 127 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 NKRFO15226 690 aaKnown RBP eCLIP10.87□□□□□ -0.67
NUP54-211ENST00000512151 PRDM1O75626 825 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 GLP2RO95838 553 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 MMP3P08254 477 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 ARP10275 920 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 TXNP10599 105 aaKnown RBP10.87□□□□□ -0.67
NUP54-211ENST00000512151 TRIM27P14373 513 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 ICAM3P32942 547 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 STAT2P52630 851 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 NUBP1P53384 320 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 PTK7Q13308 1070 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 PTPN21Q16825 1174 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 PLEKHG4Q58EX7 1191 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 SLC30A10Q6XR72 485 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 DGLUCYQ7Z3D6 616 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 AMOTL1Q8IY63 956 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 LMAN2LQ9H0V9 348 aa10.87□□□□□ -0.67
NUP54-211ENST00000512151 ISY1Q9ULR0 285 aaKnown RBP10.87□□□□□ -0.67
NUP54-211ENST00000512151 ZFHX4Q86UP3 3567 aa10.86□□□□□ -0.67
NUP54-211ENST00000512151 DNAH14Q0VDD8 3507 aa10.86□□□□□ -0.67
NUP54-211ENST00000512151 MCCP23508 829 aa10.86□□□□□ -0.67
NUP54-211ENST00000512151 EDNRBP24530 442 aa10.86□□□□□ -0.67
NUP54-211ENST00000512151 DNAJB1P25685 340 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms