RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 EFCAB2Q5VUJ9 269 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 KANK3Q6NY19 840 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 GIGYF2Q6Y7W6 1299 aaKnown RBP13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 PIGWQ7Z7B1 504 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 LRRC45Q96CN5 670 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 ZNF317Q96PQ6 595 aaPredicted RBP13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 NUDCD1Q96RS6 583 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 ETNK1Q9HBU6 452 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 CAMSAP1Q5T5Y3 1602 aa13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 NUTM2BA6NNL0 878 aaPredicted RBP13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 NUTM2EB1AL46 878 aaPredicted RBP13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 H0YGN5 161 aa13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 UBE2Q2LH0YL09 131 aa13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 ACTN4O43707 911 aaKnown RBP13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 VIL1P09327 827 aaKnown RBP13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 CALB2P22676 271 aa13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 PSMC4P43686 418 aa13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 TYW1BQ6NUM6 668 aa13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 TRAPPC9Q96Q05 1148 aa13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 NLRP2Q9NX02 1062 aa13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 PAIP2BQ9ULR5 123 aaKnown RBP13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 NFS1Q9Y697 457 aa13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 ZNF609O15014 1411 aa13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 ASAP2O43150 1006 aa13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 PRC1O43663 620 aa13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 FLT3P36888 993 aa13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 KLK7P49862 253 aa13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 OLFML2BQ68BL8 750 aa13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 INTS9Q9NV88 658 aaKnown RBP13.18□□□□□ -0.3
LIMCH1-213ENST00000511496 PALM3A6NDB9 673 aaPredicted RBP13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 PDLIM1O00151 329 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 ZNF263O14978 683 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 SEMA3EO15041 775 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 GNAZP19086 355 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 RPL13P26373 211 aaKnown RBP13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 SPAG1Q07617 926 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 DPY19L2Q6NUT2 758 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 PI16Q6UXB8 463 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 PTF1AQ7RTS3 328 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 ZC3H18Q86VM9 953 aaKnown RBP13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 NBPF15Q8N660 670 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 MB21D1Q8N884 522 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 HIC2Q96JB3 615 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 DNAJC7Q99615 494 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 UNC45AQ9H3U1 944 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 RNPEPL1Q9HAU8 725 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 TMCO1Q9UM00 188 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 TMCC1O94876 653 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 PTDSS1P48651 473 aaKnown RBP13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 ANKRD27Q96NW4 1050 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 CSRNP2Q9H175 543 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 ARHGEF3Q9NR81 526 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 PACSIN2Q9UNF0 486 aaPredicted RBP13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 HPS5Q9UPZ3 1129 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 OVOS2A0A0G2JMS6 1433 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 OVOS2A0A0J9YW53 1432 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 OVOS2Q6IE36 1432 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 SART1O43290 800 aaKnown RBP13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 GNA14O95837 355 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 CWF19L2Q2TBE0 894 aaKnown RBP13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 ZC2HC1CQ53FD0 456 aaPredicted RBP13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 AGBL2Q5U5Z8 902 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 OLFML1Q6UWY5 402 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 EPSTI1Q96J88 318 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 IWS1Q96ST2 819 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 TLR10Q9BXR5 811 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 ETNK2Q9NVF9 386 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 CAPN11Q9UMQ6 739 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 SETBP1Q9Y6X0 1596 aa13.17□□□□□ -0.3
LIMCH1-213ENST00000511496 BTBD18B2RXH4 712 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 E2F6O75461 281 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 SPATA31D3P0C874 917 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 ZCCHC18P0CG32 403 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 ZNF131P52739 623 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 SPATA31D4Q6ZUB0 917 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 ZNF572Q7Z3I7 529 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 SUPT20HQ8NEM7 779 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 MGARPQ8TDB4 240 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 CNOT10Q9H9A5 744 aaKnown RBP13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 TMOD4Q9NZQ9 345 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 PCDHA13Q9Y5I0 950 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 AKR1B10O60218 316 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 PRLRP16471 622 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 ERVK-9P63128 1117 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 CCDC6Q16204 474 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 NELFBQ8WX92 580 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 NSRP1Q9H0G5 558 aaKnown RBP13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 CCDC87Q9NVE4 849 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 SUN2Q9UH99 717 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 ABCC1P33527 1531 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 CEP104O60308 925 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 UBTFL6P0CB48 400 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 TPBGLP0DKB5 382 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 IARSP41252 1262 aaKnown RBP13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 DDB1Q16531 1140 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 CNPY1Q3B7I2 92 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 STK32AQ8WU08 396 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms