RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 FANCCQ00597 558 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 IQCEQ6IPM2 695 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 STK32CQ86UX6 486 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 APBA2Q99767 749 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 SGSM2O43147 1006 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 THBDP07204 575 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 SLC6A11P48066 632 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 ITGA1P56199 1179 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 SCRN1Q12765 414 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 MROH9Q5TGP6 573 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 C9orf131Q5VYM1 1079 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 LIMS2Q7Z4I7 341 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 TEX2Q8IWB9 1127 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 FAM126BQ8IXS8 530 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 ZNF654Q8IZM8 581 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 FAM26EQ8N5C1 309 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 BACH2Q9BYV9 841 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 DEF6Q9H4E7 631 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 L2HGDHQ9H9P8 463 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 JADE2Q9NQC1 790 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 GINM1Q9NU53 330 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 TSC22D4Q9Y3Q8 395 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 CYR61O00622 381 aa5.04□□□□□ -1.6
NUP54-208ENST00000508604 GIPRP48546 466 aa5.04□□□□□ -1.6
NUP54-208ENST00000508604 GTF2A2P52657 109 aa5.04□□□□□ -1.6
NUP54-208ENST00000508604 RPL11P62913 178 aaKnown RBP5.04□□□□□ -1.6
NUP54-208ENST00000508604 CHRNA2Q15822 529 aa5.04□□□□□ -1.6
NUP54-208ENST00000508604 KIAA1211LQ6NV74 962 aa5.04□□□□□ -1.6
NUP54-208ENST00000508604 TMEM168Q9H0V1 697 aa5.04□□□□□ -1.6
NUP54-208ENST00000508604 GPRC5CQ9NQ84 441 aa5.04□□□□□ -1.6
NUP54-208ENST00000508604 DDX41Q9UJV9 622 aaKnown RBP5.04□□□□□ -1.6
NUP54-208ENST00000508604 EFR3BQ9Y2G0 817 aa5.04□□□□□ -1.6
NUP54-208ENST00000508604 COA3Q9Y2R0 106 aaPredicted RBP5.04□□□□□ -1.6
NUP54-208ENST00000508604 MYO1BO43795 1136 aa5.03□□□□□ -1.6
NUP54-208ENST00000508604 PAK2Q13177 524 aa5.03□□□□□ -1.6
NUP54-208ENST00000508604 VHLLQ6RSH7 139 aa5.03□□□□□ -1.6
NUP54-208ENST00000508604 SPRED1Q7Z699 444 aa5.03□□□□□ -1.6
NUP54-208ENST00000508604 CIR1Q86X95 450 aaPredicted RBP5.03□□□□□ -1.6
NUP54-208ENST00000508604 BVESQ8NE79 360 aa5.03□□□□□ -1.6
NUP54-208ENST00000508604 CPLX3Q8WVH0 158 aa5.03□□□□□ -1.6
NUP54-208ENST00000508604 COPS5Q92905 334 aa5.03□□□□□ -1.6
NUP54-208ENST00000508604 PPP1R14AQ96A00 147 aa5.03□□□□□ -1.6
NUP54-208ENST00000508604 CLIC6Q96NY7 704 aa5.03□□□□□ -1.6
NUP54-208ENST00000508604 MRIQ9BWK5 157 aa5.03□□□□□ -1.6
NUP54-208ENST00000508604 TIMM13Q9Y5L4 95 aaPredicted RBP5.03□□□□□ -1.6
NUP54-208ENST00000508604 FZD7O75084 574 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 SOX9P48436 509 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 RACK1P63244 317 aaKnown RBP5.02□□□□□ -1.61
NUP54-208ENST00000508604 PRR31Q5SQ13 230 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 ARHGEF18Q6ZSZ5 1173 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 RIOX2Q8IUF8 465 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 KLHL6Q8WZ60 621 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 TRMT2BQ96GJ1 504 aaKnown RBP5.02□□□□□ -1.61
NUP54-208ENST00000508604 WRNIP1Q96S55 665 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 SYT3Q9BQG1 590 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 SSBP3Q9BWW4 388 aaPredicted RBP5.02□□□□□ -1.61
NUP54-208ENST00000508604 KLC2Q9H0B6 622 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 EMC9Q9Y3B6 208 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 ZNF16P17020 682 aaPredicted RBP5.02□□□□□ -1.61
NUP54-208ENST00000508604 STAT5AP42229 794 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 ZNF143P52747 638 aaPredicted RBP5.02□□□□□ -1.61
NUP54-208ENST00000508604 LDLRAD1Q5T700 205 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 CEP68Q76N32 757 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 DPF3Q92784 378 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 CYP26B1Q9NR63 512 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 TCAF1Q9Y4C2 921 aa5.02□□□□□ -1.61
NUP54-208ENST00000508604 B4GALT3O60512 393 aa5.01□□□□□ -1.61
NUP54-208ENST00000508604 ZNF28P17035 718 aa5.01□□□□□ -1.61
NUP54-208ENST00000508604 E4F1Q66K89 784 aaPredicted RBP5.01□□□□□ -1.61
NUP54-208ENST00000508604 MBLAC2Q68D91 279 aa5.01□□□□□ -1.61
NUP54-208ENST00000508604 TOE1Q96GM8 510 aaKnown RBP5.01□□□□□ -1.61
NUP54-208ENST00000508604 TMEM169Q96HH4 297 aa5.01□□□□□ -1.61
NUP54-208ENST00000508604 SCAND2PQ9GZW5 306 aaPredicted RBP5.01□□□□□ -1.61
NUP54-208ENST00000508604 VPS11Q9H270 941 aa5.01□□□□□ -1.61
NUP54-208ENST00000508604 FTSJ1Q9UET6 329 aa5.01□□□□□ -1.61
NUP54-208ENST00000508604 FPR2P25090 351 aa5□□□□□ -1.61
NUP54-208ENST00000508604 IL13P35225 146 aa5□□□□□ -1.61
NUP54-208ENST00000508604 PPP2CBP62714 309 aa5□□□□□ -1.61
NUP54-208ENST00000508604 PPP2CAP67775 309 aa5□□□□□ -1.61
NUP54-208ENST00000508604 CRIP3Q6Q6R5 217 aa5□□□□□ -1.61
NUP54-208ENST00000508604 ZFPM1Q8IX07 1006 aa5□□□□□ -1.61
NUP54-208ENST00000508604 GPRASP2Q96D09 838 aa5□□□□□ -1.61
NUP54-208ENST00000508604 SEMA4AQ9H3S1 761 aa5□□□□□ -1.61
NUP54-208ENST00000508604 BARX1Q9HBU1 254 aaPredicted RBP5□□□□□ -1.61
NUP54-208ENST00000508604 PPP4R1LQ9P1A2 415 aa5□□□□□ -1.61
NUP54-208ENST00000508604 APEX2Q9UBZ4 518 aa5□□□□□ -1.61
NUP54-208ENST00000508604 CROTQ9UKG9 612 aa5□□□□□ -1.61
NUP54-208ENST00000508604 HGSO14964 777 aaPredicted RBP4.99□□□□□ -1.61
NUP54-208ENST00000508604 CASP7P55210 303 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 ADAM9Q13443 819 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 ICAM4Q14773 271 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 INF2Q27J81 1249 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 CR1LQ2VPA4 569 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 GTF2IRD2BQ6EKJ0 949 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 ZNF585AQ6P3V2 769 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 GTF2IRD2Q86UP8 949 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 TRIM59Q8IWR1 403 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 DIO2Q92813 273 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 CHAMP1Q96JM3 812 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 NKX2-4Q9H2Z4 354 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms