RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 IQCF3P0C7M6 154 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 ACTN1P12814 892 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 ATP2A2P16615 1042 aaKnown RBP13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 CHMLP26374 656 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 RFC2P35250 354 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 GHRHRQ02643 423 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 BFSP2Q13515 415 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 ADGRE1Q14246 886 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 GRM4Q14833 912 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 PTGISQ16647 500 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 PPP2R2DQ66LE6 453 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 GDF6Q6KF10 455 aaPredicted RBP13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 HOMER1Q86YM7 354 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 KAT2BQ92831 832 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 SENP2Q9HC62 589 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 PRDM6Q9NQX0 595 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 DDX41Q9UJV9 622 aaKnown RBP13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 PCDHA11Q9Y5I1 949 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 MRVI1Q9Y6F6 885 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 TAF6LQ9Y6J9 622 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 COL4A4P53420 1690 aaPredicted RBP13.41□□□□□ -0.26
HMGCS1-204ENST00000507293 UNC80Q8N2C7 3258 aa13.41□□□□□ -0.26
HMGCS1-204ENST00000507293 IFIT3O14879 490 aaKnown RBP13.41□□□□□ -0.26
HMGCS1-204ENST00000507293 CASTP20810 708 aaKnown RBP13.41□□□□□ -0.26
HMGCS1-204ENST00000507293 IGFBP4P22692 258 aa13.41□□□□□ -0.26
HMGCS1-204ENST00000507293 IRX6P78412 446 aaPredicted RBP13.41□□□□□ -0.26
HMGCS1-204ENST00000507293 SLC35G1Q2M3R5 365 aa13.41□□□□□ -0.26
HMGCS1-204ENST00000507293 SESTD1Q86VW0 696 aa13.41□□□□□ -0.26
HMGCS1-204ENST00000507293 CTAGE1Q96RT6 745 aa13.41□□□□□ -0.26
HMGCS1-204ENST00000507293 PDCD2LQ9BRP1 358 aa13.41□□□□□ -0.26
HMGCS1-204ENST00000507293 FTOQ9C0B1 505 aaKnown RBP eCLIP13.41□□□□□ -0.26
HMGCS1-204ENST00000507293 PCDHA1Q9Y5I3 950 aa13.41□□□□□ -0.26
HMGCS1-204ENST00000507293 U3KPZ7 1027 aaPredicted RBP13.41□□□□□ -0.26
HMGCS1-204ENST00000507293 ERICH2A1L162 156 aa13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 ZNF286BP0CG31 522 aa13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 MYCLP12524 364 aaPredicted RBP13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 HOXA13P31271 388 aaPredicted RBP13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 WTAPQ15007 396 aa13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 CCDC85BQ15834 202 aaPredicted RBP13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 DGKDQ16760 1214 aa13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 STOX1Q6ZVD7 989 aa13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 RALYLQ86SE5 291 aaKnown RBP13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 DHX37Q8IY37 1157 aaKnown RBP13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 CCDC155Q8N6L0 562 aa13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 NCOA7Q8NI08 942 aa13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 IL31RAQ8NI17 732 aa13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 DHX38Q92620 1227 aaKnown RBP13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 EMID1Q96A84 441 aaPredicted RBP13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 PIGSQ96S52 555 aa13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 SLC9A7Q96T83 725 aa13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 ALG1Q9BT22 464 aa13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 MAP3K20Q9NYL2 800 aaKnown RBP13.4□□□□□ -0.26
HMGCS1-204ENST00000507293 E7EWF7 191 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 SGSM2O43147 1006 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 CYTH3O43739 400 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 SORBS3O60504 671 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 RGS20O76081 388 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 PSEN2P49810 448 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 LAMC2Q13753 1193 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 MFSD10Q14728 455 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 PGM5Q15124 567 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 TMEM67Q5HYA8 995 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 TJAP1Q5JTD0 557 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 SAMD3Q8N6K7 520 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 PPTC7Q8NI37 304 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 CAGE1Q8TC20 777 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 AFAP1L1Q8TED9 768 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 SYMPKQ92797 1274 aaKnown RBP13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 KATNAL1Q9BW62 490 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 RIOX1Q9H6W3 641 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 HDAC6Q9UBN7 1215 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 GTF2IRD1Q9UHL9 959 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 EYSQ5T1H1 3165 aa13.39□□□□□ -0.27
HMGCS1-204ENST00000507293 GCOM1H8Y6P7 765 aaPredicted RBP13.38□□□□□ -0.27
HMGCS1-204ENST00000507293 F2P00734 622 aa13.38□□□□□ -0.27
HMGCS1-204ENST00000507293 CA3P07451 260 aa13.38□□□□□ -0.27
HMGCS1-204ENST00000507293 POLR2MP0CAP2 368 aa13.38□□□□□ -0.27
HMGCS1-204ENST00000507293 TROAPQ12815 778 aa13.38□□□□□ -0.27
HMGCS1-204ENST00000507293 TRAF1Q13077 416 aa13.38□□□□□ -0.27
HMGCS1-204ENST00000507293 SART3Q15020 963 aaKnown RBP13.38□□□□□ -0.27
HMGCS1-204ENST00000507293 LRRC8DQ7L1W4 858 aa13.38□□□□□ -0.27
HMGCS1-204ENST00000507293 VSIG10LQ86VR7 867 aa13.38□□□□□ -0.27
HMGCS1-204ENST00000507293 FCHSD1Q86WN1 690 aa13.38□□□□□ -0.27
HMGCS1-204ENST00000507293 C7orf31Q8N865 590 aa13.38□□□□□ -0.27
HMGCS1-204ENST00000507293 ZFP91Q96JP5 570 aaPredicted RBP13.38□□□□□ -0.27
HMGCS1-204ENST00000507293 THEGQ9P2T0 379 aa13.38□□□□□ -0.27
HMGCS1-204ENST00000507293 HAS3O00219 553 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 BAIAP3O94812 1187 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 GGPS1O95749 300 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 HOXD8P13378 290 aaPredicted RBP13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 SELPP16109 830 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 UBA1P22314 1058 aaKnown RBP13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 CCND2P30279 289 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 ANTXR2P58335 489 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 RBL2Q08999 1139 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 GPNMBQ14956 572 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 KIAA0753Q2KHM9 967 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 CELF3Q5SZQ8 465 aaKnown RBP13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 MYSM1Q5VVJ2 828 aa13.37□□□□□ -0.27
HMGCS1-204ENST00000507293 KCNV1Q6PIU1 500 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms