RNA–Protein interactions for RNA: ENST00000506779.1

TOPBP1-205, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 536 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-205ENST00000506779 GNPTABQ3T906 1256 aa4.42□□□□□ -1.7
TOPBP1-205ENST00000506779 HEATR6Q6AI08 1181 aaKnown RBP4.42□□□□□ -1.7
TOPBP1-205ENST00000506779 CCDC81Q6ZN84 652 aa4.42□□□□□ -1.7
TOPBP1-205ENST00000506779 ADAT2Q7Z6V5 191 aaKnown RBP4.42□□□□□ -1.7
TOPBP1-205ENST00000506779 USP33Q8TEY7 942 aa4.42□□□□□ -1.7
TOPBP1-205ENST00000506779 TSPAN17Q96FV3 270 aa4.42□□□□□ -1.7
TOPBP1-205ENST00000506779 NOX5Q96PH1 765 aa4.42□□□□□ -1.7
TOPBP1-205ENST00000506779 HAUS7Q99871 368 aa4.42□□□□□ -1.7
TOPBP1-205ENST00000506779 BACH2Q9BYV9 841 aa4.42□□□□□ -1.7
TOPBP1-205ENST00000506779 BCAS3Q9H6U6 928 aa4.42□□□□□ -1.7
TOPBP1-205ENST00000506779 DIS3Q9Y2L1 958 aaKnown RBP4.42□□□□□ -1.7
TOPBP1-205ENST00000506779 SLC12A7Q9Y666 1083 aa4.42□□□□□ -1.7
TOPBP1-205ENST00000506779 A0A087WZG4 1122 aa4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 MROH6A6NGR9 719 aa4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 AURKAO14965 403 aa4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 CBFA2T2O43439 604 aa4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 NARSO43776 548 aaKnown RBP4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 ONECUT2O95948 504 aa4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 DPY19L1Q2PZI1 675 aa4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 FAM124AQ86V42 546 aa4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 METTL16Q86W50 562 aaKnown RBP4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 RBBP8NLQ8NC74 664 aaPredicted RBP4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 NLGN2Q8NFZ4 835 aa4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 SMARCC2Q8TAQ2 1214 aa4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 PEX11GQ96HA9 241 aa4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 METTL5Q9NRN9 209 aaKnown RBP4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 SUGT1Q9Y2Z0 365 aa4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 BACE2Q9Y5Z0 518 aa4.41□□□□□ -1.7
TOPBP1-205ENST00000506779 NPEPPSL1A6NEC2 478 aa4.4□□□□□ -1.71
TOPBP1-205ENST00000506779 VAMP4O75379 141 aa4.4□□□□□ -1.71
TOPBP1-205ENST00000506779 PPM1BO75688 479 aa4.4□□□□□ -1.71
TOPBP1-205ENST00000506779 RBM10P98175 930 aaKnown RBP4.4□□□□□ -1.71
TOPBP1-205ENST00000506779 AMPD2Q01433 879 aa4.4□□□□□ -1.71
TOPBP1-205ENST00000506779 SLC9A5Q14940 896 aa4.4□□□□□ -1.71
TOPBP1-205ENST00000506779 CCDC142Q17RM4 750 aa4.4□□□□□ -1.71
TOPBP1-205ENST00000506779 CIR1Q86X95 450 aaPredicted RBP4.4□□□□□ -1.71
TOPBP1-205ENST00000506779 NETO2Q8NC67 525 aa4.4□□□□□ -1.71
TOPBP1-205ENST00000506779 ZNF503Q96F45 646 aa4.4□□□□□ -1.71
TOPBP1-205ENST00000506779 PHAXQ9H814 394 aaKnown RBP4.4□□□□□ -1.71
TOPBP1-205ENST00000506779 GULP1Q9UBP9 304 aa4.4□□□□□ -1.71
TOPBP1-205ENST00000506779 TRBV23OR9-2A0A075B6M9 112 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 NPHP3-ACAD11A0A0J9YXS1 232 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 C2orf71A6NGG8 1288 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 SMARCA5O60264 1052 aaPredicted RBP4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 ZBTB7AO95365 584 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 EPHX1P07099 455 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 CYP2C8P10632 490 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 PAMP19021 973 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 MCM7P33993 719 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 EIF6P56537 245 aaKnown RBP4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 HDLBPQ00341 1268 aaKnown RBP4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 SLC7A5Q01650 507 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 COL9A2Q14055 689 aaPredicted RBP4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 SURF1Q15526 300 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 WWC2Q6AWC2 1192 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 CPNE8Q86YQ8 564 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 ZBTB8AQ96BR9 441 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 FGD4Q96M96 766 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 MCMBPQ9BTE3 642 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 KLHL25Q9H0H3 589 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 CGGBP1Q9UFW8 167 aaPredicted RBP4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 PCDHB10Q9UN67 800 aa4.39□□□□□ -1.71
TOPBP1-205ENST00000506779 SCAMP3O14828 347 aaKnown RBP4.38□□□□□ -1.71
TOPBP1-205ENST00000506779 NPHS1O60500 1241 aa4.38□□□□□ -1.71
TOPBP1-205ENST00000506779 CACNB2Q08289 660 aaPredicted RBP4.38□□□□□ -1.71
TOPBP1-205ENST00000506779 GRB10Q13322 594 aa4.38□□□□□ -1.71
TOPBP1-205ENST00000506779 SMAD4Q13485 552 aaKnown RBP4.38□□□□□ -1.71
TOPBP1-205ENST00000506779 IGDCC4Q8TDY8 1250 aa4.38□□□□□ -1.71
TOPBP1-205ENST00000506779 CPA5Q8WXQ8 436 aa4.38□□□□□ -1.71
TOPBP1-205ENST00000506779 GINM1Q9NU53 330 aa4.38□□□□□ -1.71
TOPBP1-205ENST00000506779 FBLN5Q9UBX5 448 aa4.38□□□□□ -1.71
TOPBP1-205ENST00000506779 EFR3BQ9Y2G0 817 aa4.38□□□□□ -1.71
TOPBP1-205ENST00000506779 FUCA1P04066 466 aa4.37□□□□□ -1.71
TOPBP1-205ENST00000506779 TCF3P15923 654 aa4.37□□□□□ -1.71
TOPBP1-205ENST00000506779 PAK2Q13177 524 aa4.37□□□□□ -1.71
TOPBP1-205ENST00000506779 PPP2R5EQ16537 467 aa4.37□□□□□ -1.71
TOPBP1-205ENST00000506779 FAM26FQ5R3K3 315 aa4.37□□□□□ -1.71
TOPBP1-205ENST00000506779 DCP2Q8IU60 420 aaKnown RBP4.37□□□□□ -1.71
TOPBP1-205ENST00000506779 ZNF654Q8IZM8 581 aa4.37□□□□□ -1.71
TOPBP1-205ENST00000506779 CRACR2BQ8N4Y2 399 aaPredicted RBP4.37□□□□□ -1.71
TOPBP1-205ENST00000506779 C19orf47Q8N9M1 422 aaKnown RBP4.37□□□□□ -1.71
TOPBP1-205ENST00000506779 OR6P1Q8NGX9 317 aa4.37□□□□□ -1.71
TOPBP1-205ENST00000506779 DDX11Q96FC9 970 aa4.37□□□□□ -1.71
TOPBP1-205ENST00000506779 SPATA32Q96LK8 384 aa4.37□□□□□ -1.71
TOPBP1-205ENST00000506779 AP5M1Q9H0R1 490 aa4.37□□□□□ -1.71
TOPBP1-205ENST00000506779 DDX41Q9UJV9 622 aaKnown RBP4.37□□□□□ -1.71
TOPBP1-205ENST00000506779 PATE3B3GLJ2 98 aa4.36□□□□□ -1.71
TOPBP1-205ENST00000506779 ZNF623O75123 536 aa4.36□□□□□ -1.71
TOPBP1-205ENST00000506779 NTRK1P04629 796 aa4.36□□□□□ -1.71
TOPBP1-205ENST00000506779 RACK1P63244 317 aaKnown RBP4.36□□□□□ -1.71
TOPBP1-205ENST00000506779 MTA3Q9BTC8 594 aa4.36□□□□□ -1.71
TOPBP1-205ENST00000506779 BTG4Q9NY30 223 aa4.36□□□□□ -1.71
TOPBP1-205ENST00000506779 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.36□□□□□ -1.71
TOPBP1-205ENST00000506779 MARCH2Q9P0N8 246 aa4.36□□□□□ -1.71
TOPBP1-205ENST00000506779 CLEC1BQ9P126 229 aa4.36□□□□□ -1.71
TOPBP1-205ENST00000506779 SIT1Q9Y3P8 196 aa4.36□□□□□ -1.71
TOPBP1-205ENST00000506779 A0A1W2PQH9 124 aa4.35□□□□□ -1.71
TOPBP1-205ENST00000506779 C7orf72A4D263 438 aa4.35□□□□□ -1.71
TOPBP1-205ENST00000506779 FBLP22087 321 aaKnown RBP4.35□□□□□ -1.71
TOPBP1-205ENST00000506779 SOX9P48436 509 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms