RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 COL20A1Q9P218 1284 aa15.13■□□□□ 0.01
TCOF1-209ENST00000506630 MROH7Q68CQ1 1323 aa15.13■□□□□ 0.01
TCOF1-209ENST00000506630 NID2Q14112 1375 aa15.12■□□□□ 0.01
TCOF1-209ENST00000506630 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.12■□□□□ 0.01
TCOF1-209ENST00000506630 HOXA13P31271 388 aaPredicted RBP15.12■□□□□ 0.01
TCOF1-209ENST00000506630 HSD17B4P51659 736 aa15.12■□□□□ 0.01
TCOF1-209ENST00000506630 ANAPC15P60006 121 aa15.12■□□□□ 0.01
TCOF1-209ENST00000506630 PPIGQ13427 754 aaKnown RBP eCLIP15.12■□□□□ 0.01
TCOF1-209ENST00000506630 TOB2Q14106 344 aaPredicted RBP15.12■□□□□ 0.01
TCOF1-209ENST00000506630 C8orf34Q49A92 452 aa15.12■□□□□ 0.01
TCOF1-209ENST00000506630 ARHGEF16Q5VV41 709 aa15.12■□□□□ 0.01
TCOF1-209ENST00000506630 MFSD5Q6N075 450 aa15.12■□□□□ 0.01
TCOF1-209ENST00000506630 NOL8Q76FK4 1167 aaKnown RBP15.12■□□□□ 0.01
TCOF1-209ENST00000506630 ATXN2LQ8WWM7 1075 aaKnown RBP15.12■□□□□ 0.01
TCOF1-209ENST00000506630 PPM1EQ8WY54 764 aa15.12■□□□□ 0.01
TCOF1-209ENST00000506630 RMDN3Q96TC7 470 aa15.12■□□□□ 0.01
TCOF1-209ENST00000506630 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.12■□□□□ 0.01
TCOF1-209ENST00000506630 PDRG1Q9NUG6 133 aa15.12■□□□□ 0.01
TCOF1-209ENST00000506630 SYNRGQ9UMZ2 1314 aa15.12■□□□□ 0.01
TCOF1-209ENST00000506630 VCANP13611 3396 aa15.11■□□□□ 0.01
TCOF1-209ENST00000506630 CCDC196A0A1B0GTZ2 297 aa15.11■□□□□ 0.01
TCOF1-209ENST00000506630 GCOM1H8Y6P7 765 aaPredicted RBP15.11■□□□□ 0.01
TCOF1-209ENST00000506630 POLR2MP0CAP2 368 aa15.11■□□□□ 0.01
TCOF1-209ENST00000506630 EIF2AK2P19525 551 aaKnown RBP15.11■□□□□ 0.01
TCOF1-209ENST00000506630 GHRHRQ02643 423 aa15.11■□□□□ 0.01
TCOF1-209ENST00000506630 KCNA10Q16322 511 aa15.11■□□□□ 0.01
TCOF1-209ENST00000506630 CCSAPQ6IQ19 270 aaPredicted RBP15.11■□□□□ 0.01
TCOF1-209ENST00000506630 HEATR3Q7Z4Q2 680 aa15.11■□□□□ 0.01
TCOF1-209ENST00000506630 NSUN6Q8TEA1 469 aaKnown RBP15.11■□□□□ 0.01
TCOF1-209ENST00000506630 GPKOWQ92917 476 aaPredicted RBP eCLIP15.11■□□□□ 0.01
TCOF1-209ENST00000506630 VTI1AQ96AJ9 217 aa15.11■□□□□ 0.01
TCOF1-209ENST00000506630 SPC25Q9HBM1 224 aa15.11■□□□□ 0.01
TCOF1-209ENST00000506630 PDGFCQ9NRA1 345 aa15.11■□□□□ 0.01
TCOF1-209ENST00000506630 FAM217BQ9NTX9 383 aaPredicted RBP15.11■□□□□ 0.01
TCOF1-209ENST00000506630 MAP3K20Q9NYL2 800 aaKnown RBP15.11■□□□□ 0.01
TCOF1-209ENST00000506630 TBX21Q9UL17 535 aa15.11■□□□□ 0.01
TCOF1-209ENST00000506630 ELP1O95163 1332 aa15.11■□□□□ 0.01
TCOF1-209ENST00000506630 CTAGE5O15320 804 aa15.1■□□□□ 0.01
TCOF1-209ENST00000506630 DUSP11O75319 330 aaKnown RBP15.1■□□□□ 0.01
TCOF1-209ENST00000506630 EDNRBP24530 442 aa15.1■□□□□ 0.01
TCOF1-209ENST00000506630 ADD1P35611 737 aaKnown RBP15.1■□□□□ 0.01
TCOF1-209ENST00000506630 CCT2P78371 535 aaKnown RBP15.1■□□□□ 0.01
TCOF1-209ENST00000506630 TNFAIP2Q03169 654 aa15.1■□□□□ 0.01
TCOF1-209ENST00000506630 PPP2R5BQ15173 497 aa15.1■□□□□ 0.01
TCOF1-209ENST00000506630 TAPT1Q6NXT6 567 aa15.1■□□□□ 0.01
TCOF1-209ENST00000506630 FCHSD1Q86WN1 690 aa15.1■□□□□ 0.01
TCOF1-209ENST00000506630 TMEM199Q8N511 208 aa15.1■□□□□ 0.01
TCOF1-209ENST00000506630 SAMD3Q8N6K7 520 aa15.1■□□□□ 0.01
TCOF1-209ENST00000506630 PCSK9Q8NBP7 692 aaKnown RBP15.1■□□□□ 0.01
TCOF1-209ENST00000506630 KLHDC9Q8NEP7 349 aa15.1■□□□□ 0.01
TCOF1-209ENST00000506630 CUL5Q93034 780 aa15.1■□□□□ 0.01
TCOF1-209ENST00000506630 LARP6Q9BRS8 491 aaKnown RBP15.1■□□□□ 0.01
TCOF1-209ENST00000506630 PXMP2Q9NR77 195 aa15.1■□□□□ 0.01
TCOF1-209ENST00000506630 THEGQ9P2T0 379 aa15.1■□□□□ 0.01
TCOF1-209ENST00000506630 C6orf222P0C671 652 aaPredicted RBP15.09■□□□□ 0.01
TCOF1-209ENST00000506630 PDIA3P30101 505 aaKnown RBP15.09■□□□□ 0.01
TCOF1-209ENST00000506630 FUT2Q10981 343 aa15.09■□□□□ 0.01
TCOF1-209ENST00000506630 TMEM240Q5SV17 173 aa15.09■□□□□ 0.01
TCOF1-209ENST00000506630 PSRC1Q6PGN9 363 aaPredicted RBP15.09■□□□□ 0.01
TCOF1-209ENST00000506630 TLK2Q86UE8 772 aa15.09■□□□□ 0.01
TCOF1-209ENST00000506630 IL27Q8NEV9 243 aa15.09■□□□□ 0.01
TCOF1-209ENST00000506630 SMARCC2Q8TAQ2 1214 aa15.09■□□□□ 0.01
TCOF1-209ENST00000506630 ASB2Q96Q27 587 aa15.09■□□□□ 0.01
TCOF1-209ENST00000506630 IWS1Q96ST2 819 aa15.09■□□□□ 0.01
TCOF1-209ENST00000506630 PBX4Q9BYU1 374 aa15.09■□□□□ 0.01
TCOF1-209ENST00000506630 PRDM12Q9H4Q4 367 aa15.09■□□□□ 0.01
TCOF1-209ENST00000506630 MSRAQ9UJ68 235 aa15.09■□□□□ 0.01
TCOF1-209ENST00000506630 V9GY48 417 aaPredicted RBP15.09■□□□□ 0.01
TCOF1-209ENST00000506630 TLR3O15455 904 aaKnown RBP15.08■□□□□ 0
TCOF1-209ENST00000506630 MYCLP12524 364 aaPredicted RBP15.08■□□□□ 0
TCOF1-209ENST00000506630 CSF2RAP15509 400 aa15.08■□□□□ 0
TCOF1-209ENST00000506630 SMPD1P17405 629 aa15.08■□□□□ 0
TCOF1-209ENST00000506630 PBX2P40425 430 aa15.08■□□□□ 0
TCOF1-209ENST00000506630 NAPAP54920 295 aa15.08■□□□□ 0
TCOF1-209ENST00000506630 GJA9P57773 515 aa15.08■□□□□ 0
TCOF1-209ENST00000506630 STK3Q13188 491 aa15.08■□□□□ 0
TCOF1-209ENST00000506630 STXBP2Q15833 593 aa15.08■□□□□ 0
TCOF1-209ENST00000506630 WWC2Q6AWC2 1192 aa15.08■□□□□ 0
TCOF1-209ENST00000506630 IQSEC1Q6DN90 963 aa15.08■□□□□ 0
TCOF1-209ENST00000506630 WDR11Q9BZH6 1224 aa15.08■□□□□ 0
TCOF1-209ENST00000506630 MTIF3Q9H2K0 278 aaKnown RBP15.08■□□□□ 0
TCOF1-209ENST00000506630 NCOA5Q9HCD5 579 aaKnown RBP15.08■□□□□ 0
TCOF1-209ENST00000506630 GTF3C3Q9Y5Q9 886 aa15.08■□□□□ 0
TCOF1-209ENST00000506630 SPTBN5Q9NRC6 3674 aaKnown RBP15.07■□□□□ 0
TCOF1-209ENST00000506630 A0A0U1RQG5 324 aaPredicted RBP15.07■□□□□ 0
TCOF1-209ENST00000506630 GRXCR1A8MXD5 290 aa15.07■□□□□ 0
TCOF1-209ENST00000506630 RBAK-RBAKDNI3L0D1 243 aa15.07■□□□□ 0
TCOF1-209ENST00000506630 ASGR1P07306 291 aa15.07■□□□□ 0
TCOF1-209ENST00000506630 IGFBP4P22692 258 aa15.07■□□□□ 0
TCOF1-209ENST00000506630 CST5P28325 142 aaPredicted RBP15.07■□□□□ 0
TCOF1-209ENST00000506630 CDK7P50613 346 aa15.07■□□□□ 0
TCOF1-209ENST00000506630 EVCP57679 992 aa15.07■□□□□ 0
TCOF1-209ENST00000506630 MRPS5P82675 430 aaKnown RBP15.07■□□□□ 0
TCOF1-209ENST00000506630 AKAP17AQ02040 695 aaKnown RBP15.07■□□□□ 0
TCOF1-209ENST00000506630 PGM5Q15124 567 aa15.07■□□□□ 0
TCOF1-209ENST00000506630 RAB30Q15771 203 aa15.07■□□□□ 0
TCOF1-209ENST00000506630 RASIP1Q5U651 963 aa15.07■□□□□ 0
TCOF1-209ENST00000506630 USP17L6PQ6QN14 398 aa15.07■□□□□ 0
TCOF1-209ENST00000506630 SEPT14Q6ZU15 432 aa15.07■□□□□ 0
TCOF1-209ENST00000506630 ZNF365Q70YC5 407 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms