RNA–Protein interactions for RNA: ENST00000506063.1

TCOF1-208, Transcript of treacle ribosome biogenesis factor 1, human

TSL 4

Gene TCOF1, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCOF1-208	ENST00000506063	TOP3B	O95985	862 aa	Known RBP	4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	ITGB1	P05556	798 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	NBPF7	P0C2Y1	421 aa	Predicted RBP	4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	RBM25	P49756	843 aa	Known RBP	4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	PPP4C	P60510	307 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	CNTN2	Q02246	1040 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	EVX2	Q03828	476 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	PTPN11	Q06124	597 aa	Predicted RBP	4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	SRSF1	Q07955	248 aa	Known RBP eCLIP	4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	ABCB5	Q2M3G0	1257 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	CCDC102B	Q68D86	513 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	GDF6	Q6KF10	455 aa	Predicted RBP	4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	PI16	Q6UXB8	463 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	PDZD3	Q86UT5	571 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	SESTD1	Q86VW0	696 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	CLEC10A	Q8IUN9	316 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	C1orf210	Q8IVY1	113 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	SLF2	Q8IX21	1173 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	ZDHHC14	Q8IZN3	488 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	SPICE1	Q8N0Z3	855 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	SIX5	Q8N196	739 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	DBF4B	Q8NFT6	615 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	FEZF2	Q8TBJ5	459 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	SPPL3	Q8TCT6	385 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	TGFBRAP1	Q8WUH2	860 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	YME1L1	Q96TA2	773 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	BICC1	Q9H694	974 aa	Known RBP	4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	RXFP3	Q9NSD7	469 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	IFT57	Q9NWB7	429 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	ANKFY1	Q9P2R3	1169 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	SAP30BP	Q9UHR5	308 aa	Known RBP	4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	USP18	Q9UMW8	372 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	DOCK6	Q96HP0	2047 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	C2CD3	Q4AC94	2353 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	KIAA1217	Q5T5P2	1943 aa		4.15	□□□□□ -1.74
TCOF1-208	ENST00000506063	MYH15	Q9Y2K3	1946 aa		4.15	□□□□□ -1.74
TCOF1-208	ENST00000506063	MYH4	Q9Y623	1939 aa		4.15	□□□□□ -1.74
TCOF1-208	ENST00000506063	CACNA1E	Q15878	2313 aa		4.15	□□□□□ -1.74
TCOF1-208	ENST00000506063	EYA2	O00167	538 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	PER2	O15055	1255 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	AMH	P03971	560 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	DCN	P07585	359 aa	Known RBP	4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	PLA2G2A	P14555	144 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	SPINK2	P20155	84 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	COPB2	P35606	906 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	GABPA	Q06546	454 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	TBC1D8B	Q0IIM8	1120 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	SPEM2	Q0P670	501 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	FKBP5	Q13451	457 aa	Predicted RBP	4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	HIC1	Q14526	733 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	PTGIS	Q16647	500 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	DUSP6	Q16828	381 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	ZNF528	Q3MIS6	628 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	CERKL	Q49MI3	558 aa	Predicted RBP	4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	DUSP28	Q4G0W2	176 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	PLEKHG4	Q58EX7	1191 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	FAM47C	Q5HY64	1035 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	ZNF618	Q5T7W0	954 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	ANKRD54	Q6NXT1	300 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	TBC1D9	Q6ZT07	1266 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	ERICH6	Q7L0X2	663 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	RBM23	Q86U06	439 aa	Known RBP	4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	FBXO16	Q8IX29	292 aa	Predicted RBP	4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	CCDC146	Q8IYE0	955 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	ZCCHC14	Q8WYQ9	949 aa	Known RBP	4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	PIK3R5	Q8WYR1	880 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	P2RX5	Q93086	422 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	ZNF689	Q96CS4	500 aa	Predicted RBP	4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	PURB	Q96QR8	312 aa	Known RBP	4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	MTG1	Q9BT17	334 aa	Predicted RBP	4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	PLVAP	Q9BX97	442 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	ADAM33	Q9BZ11	813 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	AP5M1	Q9H0R1	490 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	EHD4	Q9H223	541 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	VCPKMT	Q9H867	229 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	POLR3E	Q9NVU0	708 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	RNF216	Q9NWF9	866 aa	Predicted RBP	4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	AATF	Q9NY61	560 aa	Known RBP eCLIP	4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	LIMD1	Q9UGP4	676 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	PPP1R9A	Q9ULJ8	1098 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	DUSP12	Q9UNI6	340 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	ASCC3	Q8N3C0	2202 aa	Known RBP	4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	ADGRA3	Q8IWK6	1321 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	ITPR3	Q14573	2671 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	BAZ2A	Q9UIF9	1905 aa	Known RBP	4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	PLXNB3	Q9ULL4	1909 aa		4.15	□□□□□ -1.75
TCOF1-208	ENST00000506063	ATM	Q13315	3056 aa		4.14	□□□□□ -1.75
TCOF1-208	ENST00000506063	URB1	O60287	2271 aa	Known RBP	4.14	□□□□□ -1.75
TCOF1-208	ENST00000506063	ATP2A1	O14983	1001 aa		4.14	□□□□□ -1.75
TCOF1-208	ENST00000506063	WDR46	O15213	610 aa	Known RBP	4.14	□□□□□ -1.75
TCOF1-208	ENST00000506063	NARS	O43776	548 aa	Known RBP	4.14	□□□□□ -1.75
TCOF1-208	ENST00000506063	LRRN2	O75325	713 aa		4.14	□□□□□ -1.75
TCOF1-208	ENST00000506063	UPP2	O95045	317 aa		4.14	□□□□□ -1.75
TCOF1-208	ENST00000506063	PRB1	P04280	392 aa		4.14	□□□□□ -1.75
TCOF1-208	ENST00000506063	PLCD1	P51178	756 aa		4.14	□□□□□ -1.75
TCOF1-208	ENST00000506063	ATP2B3	Q16720	1220 aa		4.14	□□□□□ -1.75
TCOF1-208	ENST00000506063	SPTY2D1	Q68D10	685 aa	Predicted RBP	4.14	□□□□□ -1.75
TCOF1-208	ENST00000506063	IQSEC1	Q6DN90	963 aa		4.14	□□□□□ -1.75
TCOF1-208	ENST00000506063	SNRNP48	Q6IEG0	339 aa	Known RBP	4.14	□□□□□ -1.75
TCOF1-208	ENST00000506063	PRR23C	Q6ZRP0	262 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 13 ms