RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 CDK17Q00537 523 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 AMPD3Q01432 767 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 CASP8Q14790 479 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 DALRD3Q5D0E6 543 aaKnown RBP17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 SOGA3Q5TF21 947 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 CENPPQ6IPU0 288 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 KIAA1328Q86T90 577 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 TXLNBQ8N3L3 684 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 EXOC4Q96A65 974 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 RIOX1Q9H6W3 641 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 KCNQ5Q9NR82 932 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 PSD3Q9NYI0 1048 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 CD2APQ9Y5K6 639 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 RASSF7Q02833 373 aa17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ORC2Q13416 577 aaPredicted RBP17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 CNNM4Q6P4Q7 775 aa17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 CERS3Q8IU89 383 aa17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 GBP3Q9H0R5 595 aa17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 SLC39A2Q9NP94 309 aa17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ZNF277Q9NRM2 450 aaPredicted RBP17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 RNF216Q9NWF9 866 aaPredicted RBP17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 SEC63Q9UGP8 760 aaKnown RBP17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 DUSP10Q9Y6W6 482 aa17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 MYMKA6NI61 221 aa17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ZNF263O14978 683 aa17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 KRT86O43790 486 aa17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 IL1R1P14778 569 aa17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 TXKP42681 527 aa17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 SP8Q8IXZ3 490 aa17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 REXO1Q8N1G1 1221 aaKnown RBP17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 CALML4Q96GE6 196 aa17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 DBNDD1Q9H9R9 158 aa17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ZNHIT6Q9NWK9 470 aaKnown RBP17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 FOCADQ5VW36 1801 aa17.91■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 LRRIQ3A6PVS8 624 aaPredicted RBP17.9■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 CYP27A1Q02318 531 aa17.9■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 AOC3Q16853 763 aa17.9■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ZBTB9Q96C00 473 aa17.9■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 FAM163AQ96GL9 167 aaPredicted RBP17.9■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 GGA1Q9UJY5 639 aa17.9■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 YBX3P16989 372 aaKnown RBP eCLIP17.9■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 HNRNPH3P31942 346 aaKnown RBP17.9■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 FXR2P51116 673 aaKnown RBP eCLIP17.9■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 SV2BQ7L1I2 683 aa17.9■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 EHBP1Q8NDI1 1231 aa17.9■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 SIK3Q9Y2K2 1263 aa17.9■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 LRRC37AA6NMS7 1700 aa17.89■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 SLC37A4O43826 429 aa17.89■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 PLEKP08567 350 aaPredicted RBP17.89■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 PDHBP11177 359 aa17.89■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 GPS2Q13227 327 aa17.89■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 UNC13DQ70J99 1090 aa17.89■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 PCMTD1Q96MG8 357 aaPredicted RBP17.89■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 GAKO14976 1311 aa17.89■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 PVALEFA0A1B0GWK0 134 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 EPHB6O15197 1021 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 EIF3JO75822 258 aaKnown RBP17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 VAV2P52735 878 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 CALCRLQ16602 461 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 COA7Q96BR5 231 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 NUDT12Q9BQG2 462 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 MXD3Q9BW11 206 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 VPS18Q9P253 973 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 STK17AQ9UEE5 414 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 LRWD1Q9UFC0 647 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 FRMPD2Q68DX3 1309 aaPredicted RBP17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 PDE2AO00408 941 aaPredicted RBP17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 TDP2O95551 362 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 PLCG2P16885 1265 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 VWA3BQ502W6 1294 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 FKBP15Q5T1M5 1219 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 CAPZA3Q96KX2 299 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 PLAGL2Q9UPG8 496 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 LTBP1Q14766 1721 aa17.88■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 ANO9A1A5B4 782 aa17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 ZNF185O15231 689 aa17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 ATP2B4P23634 1241 aa17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 KRT26Q7Z3Y9 468 aa17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 GEMIN8Q9NWZ8 242 aaKnown RBP17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 ARHGAP20Q9P2F6 1191 aa17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 FAN1Q9Y2M0 1017 aa17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 PLIN4Q96Q06 1357 aa17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 hCG_1984214I3L0E3 225 aa17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 PRELPP51888 382 aa17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 MUM1L1Q5H9M0 696 aa17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 DYMQ7RTS9 669 aa17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 ZNF713Q8N859 430 aaPredicted RBP17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 LARP4BQ92615 738 aaKnown RBP17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 TMX4Q9H1E5 349 aaPredicted RBP17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 NDST4Q9H3R1 872 aa17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 EFCC1Q9HA90 598 aa17.87■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 COL4A5P29400 1685 aa17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 CKAP4Q07065 602 aaKnown RBP17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 EHHADHQ08426 723 aa17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 MFSD14BQ5SR56 506 aa17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 KCNK18Q7Z418 384 aa17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 GUF1Q8N442 669 aaKnown RBP17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 RAD54LQ92698 747 aa17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 IQCDQ96DY2 449 aa17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 RPGRIP1Q96KN7 1286 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms