RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 DNERQ8NFT8 737 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 NEK9Q8TD19 979 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 CRYGNQ8WXF5 182 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 CLEC4DQ8WXI8 215 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 IWS1Q96ST2 819 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 RMDN3Q96TC7 470 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 RIT2Q99578 217 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 FUCA2Q9BTY2 467 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 PANK2Q9BZ23 570 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 TMEM60Q9H2L4 133 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 MROH8Q9H579 483 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 KCNMB3Q9NPA1 279 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 HOMER2Q9NSB8 354 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 TBC1D22BQ9NU19 505 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 SERTAD1Q9UHV2 236 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 TUBE1Q9UJT0 475 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 ZNF214Q9UL59 606 aaPredicted RBP9.5□□□□□ -0.89
SF3A1-210ENST00000498259 LOC102724159A0A0B4J2E5 919 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 SPDYE16A6NNV3 312 aaPredicted RBP9.49□□□□□ -0.89
SF3A1-210ENST00000498259 OPLAHO14841 1288 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 ACTN4O43707 911 aaKnown RBP9.49□□□□□ -0.89
SF3A1-210ENST00000498259 GTPBP6O43824 516 aaPredicted RBP9.49□□□□□ -0.89
SF3A1-210ENST00000498259 SLC37A4O43826 429 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 DKC1O60832 514 aaKnown RBP eCLIP9.49□□□□□ -0.89
SF3A1-210ENST00000498259 CELF2O95319 508 aaKnown RBP9.49□□□□□ -0.89
SF3A1-210ENST00000498259 GCLCP48506 637 aaPredicted RBP9.49□□□□□ -0.89
SF3A1-210ENST00000498259 INHBEP58166 350 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 HERVK_113P62684 666 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 RPS6P62753 249 aaKnown RBP9.49□□□□□ -0.89
SF3A1-210ENST00000498259 CCDC173Q0VFZ6 552 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 TMEM132BQ14DG7 1078 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 PWP2Q15269 919 aaKnown RBP9.49□□□□□ -0.89
SF3A1-210ENST00000498259 GNPTABQ3T906 1256 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 ANO6Q4KMQ2 910 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 GAS2L3Q86XJ1 694 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 PLA2G4DQ86XP0 818 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 RIOX2Q8IUF8 465 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 ANKRD35Q8N283 1001 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 SYTL5Q8TDW5 730 aaPredicted RBP9.49□□□□□ -0.89
SF3A1-210ENST00000498259 SNX29Q8TEQ0 813 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 SMCR8Q8TEV9 937 aaPredicted RBP9.49□□□□□ -0.89
SF3A1-210ENST00000498259 PAGE5Q96GU1 130 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 MXRA8Q9BRK3 442 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 ZNF577Q9BSK1 485 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 RBSNQ9H1K0 784 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.49□□□□□ -0.89
SF3A1-210ENST00000498259 FZD1Q9UP38 647 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 MRVI1Q9Y6F6 885 aa9.49□□□□□ -0.89
SF3A1-210ENST00000498259 MEIS1O00470 390 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 NFIBO00712 420 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 WNT7AO00755 349 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 ADAMTS3O15072 1205 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 GAS7O60861 476 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 KIF20AO95235 890 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 CCT6AP40227 531 aaKnown RBP9.48□□□□□ -0.89
SF3A1-210ENST00000498259 MDM2Q00987 491 aaPredicted RBP9.48□□□□□ -0.89
SF3A1-210ENST00000498259 GRIN1Q05586 938 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 MTMR1Q13613 665 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 KARSQ15046 597 aaKnown RBP9.48□□□□□ -0.89
SF3A1-210ENST00000498259 IL17AQ16552 155 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 LRCH2Q5VUJ6 765 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 RNF214Q8ND24 703 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 GIMAP8Q8ND71 665 aaPredicted RBP9.48□□□□□ -0.89
SF3A1-210ENST00000498259 REPS2Q8NFH8 660 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 ETNPPLQ8TBG4 499 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 HAS1Q92839 578 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 TRIM44Q96DX7 344 aaPredicted RBP9.48□□□□□ -0.89
SF3A1-210ENST00000498259 CLMNQ96JQ2 1002 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 TEKT3Q9BXF9 490 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 SPATC1LQ9H0A9 340 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 ASCC2Q9H1I8 757 aaPredicted RBP9.48□□□□□ -0.89
SF3A1-210ENST00000498259 ZCCHC17Q9NP64 241 aaKnown RBP9.48□□□□□ -0.89
SF3A1-210ENST00000498259 JADE2Q9NQC1 790 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 DNM3Q9UQ16 869 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 PCDHA5Q9Y5H7 936 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 RPTORQ8N122 1335 aa9.48□□□□□ -0.89
SF3A1-210ENST00000498259 PAPPA2Q9BXP8 1791 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 POLR2AP24928 1970 aaKnown RBP9.47□□□□□ -0.89
SF3A1-210ENST00000498259 GOLGA6L6A8MZA4 724 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 FAM86B1E9PN63 330 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 IPO5O00410 1097 aaKnown RBP9.47□□□□□ -0.89
SF3A1-210ENST00000498259 IKBKBO14920 756 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 MSH4O15457 936 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 TPM3P06753 285 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 FAM86B2P0C5J1 330 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 XRCC6P12956 609 aaKnown RBP eCLIP9.47□□□□□ -0.89
SF3A1-210ENST00000498259 RPA1P27694 616 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 ERCC5P28715 1186 aaPredicted RBP9.47□□□□□ -0.89
SF3A1-210ENST00000498259 SFNP31947 248 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 AFMP43652 599 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 SARSP49591 514 aaKnown RBP9.47□□□□□ -0.89
SF3A1-210ENST00000498259 PSMD2Q13200 908 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 PPP2R5CQ13362 524 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 PNOCQ13519 176 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 BAATQ14032 418 aaPredicted RBP9.47□□□□□ -0.89
SF3A1-210ENST00000498259 DHX8Q14562 1220 aaKnown RBP9.47□□□□□ -0.89
SF3A1-210ENST00000498259 KCTD2Q14681 263 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 KCNB1Q14721 858 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 E2F4Q16254 413 aa9.47□□□□□ -0.89
SF3A1-210ENST00000498259 HYIQ5T013 277 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms