RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 SOX6P35712 828 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 POSTNQ15063 836 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 HECTD3Q5T447 861 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 NCOA7Q8NI08 942 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 STAG1Q8WVM7 1258 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 CNPY3Q9BT09 278 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 CNNM2Q9H8M5 875 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 LRRC40Q9H9A6 602 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 TMBIM4Q9HC24 238 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 BLOC1S6Q9UL45 172 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 APOBEC2Q9Y235 224 aaKnown RBP6.32□□□□□ -1.4
USF3-204ENST00000496826 RGS20O76081 388 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 PDHA1P08559 390 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 CUL1Q13616 776 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 USP51Q70EK9 711 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 BBS7Q8IWZ6 715 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 TRIM58Q8NG06 486 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 ZKSCAN3Q9BRR0 538 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 FRMD8Q9BZ67 464 aaPredicted RBP6.32□□□□□ -1.4
USF3-204ENST00000496826 LCMT1Q9UIC8 334 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 FTLP02792 175 aaPredicted RBP6.32□□□□□ -1.4
USF3-204ENST00000496826 STK4Q13043 487 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 ZNF699Q32M78 642 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 PLEKHO1Q53GL0 409 aaPredicted RBP6.32□□□□□ -1.4
USF3-204ENST00000496826 KIAA2013Q8IYS2 634 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 ZNF248Q8NDW4 579 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 TOP1MTQ969P6 601 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 RETREG1Q9H6L5 497 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 KLHL14Q9P2G3 628 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 CUTAO60888 179 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 ITIH2P19823 946 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 BCAR1P56945 870 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 RGS8P57771 180 aaPredicted RBP6.32□□□□□ -1.4
USF3-204ENST00000496826 TRAP1Q12931 704 aaKnown RBP6.32□□□□□ -1.4
USF3-204ENST00000496826 ZNF394Q53GI3 561 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 BTN2A2Q8WVV5 523 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 AIDAQ96BJ3 306 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 TRIM62Q9BVG3 475 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 TRPC7Q9HCX4 862 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 ZNF232Q9UNY5 417 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 SMIM23A6NLE4 172 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 CBFA2T3O75081 653 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 ARIH2O95376 493 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 PLCG2P16885 1265 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 NCAPHQ15003 741 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 SLC9C2Q5TAH2 1124 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 LARP1BQ659C4 914 aaKnown RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 PLEKHA7Q6IQ23 1121 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 ZNF713Q8N859 430 aaPredicted RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 POMGNT1Q8WZA1 660 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 LRRC59Q96AG4 307 aaKnown RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 MTERF3Q96E29 417 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 RMND5BQ96G75 393 aaPredicted RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 TIMMDC1Q9NPL8 285 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 TSC22D4Q9Y3Q8 395 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 MED7O43513 233 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 DAB2P98082 770 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 DDR2Q16832 855 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 AARS2Q5JTZ9 985 aaKnown RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 CENPPQ6IPU0 288 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 FGD2Q7Z6J4 655 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 FAM45AQ8TCE6 357 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 LRRC8CQ8TDW0 803 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 SKA2Q8WVK7 121 aaPredicted RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 FNBP1Q96RU3 617 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 DDX21Q9NR30 783 aaKnown RBP eCLIP6.31□□□□□ -1.4
USF3-204ENST00000496826 SUN2Q9UH99 717 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 FAM200BP0CF97 657 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 XRCC5P13010 732 aaKnown RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 KRT15P19012 456 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 CHMLP26374 656 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 DCKP27707 260 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 LSP1P33241 339 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 GUCY1A3Q02108 690 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 IFIT5Q13325 482 aaKnown RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 CASP8Q14790 479 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 UAP1Q16222 522 aaPredicted RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 MARK2Q7KZI7 788 aaKnown RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 ERICH1Q86X53 443 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 OGFOD1Q8N543 542 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 RNASE11Q8TAA1 199 aaKnown RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 MARK1Q9P0L2 795 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 KIF17Q9P2E2 1029 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 ARHGAP6O43182 974 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 RGS10O43665 173 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 EEF1B2P24534 225 aaKnown RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 SEPT2Q15019 361 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 FSCN1Q16658 493 aaKnown RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 SLC44A4Q53GD3 710 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 HSP90AA4PQ58FG1 418 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 SPOPLQ6IQ16 392 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 RINT1Q6NUQ1 792 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 MSANTD1Q6ZTZ1 278 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 LMBRD1Q9NUN5 540 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 PCDHB8Q9UN66 801 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 PCDHB13Q9Y5F0 798 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 ZPR1O75312 459 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 SPAG7O75391 227 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 SUPT3HO75486 399 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 IL18R1Q13478 541 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms