RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, human

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMC4-223	ENST00000493695	ST6GALNAC2	Q9UJ37	374 aa		7.19	□□□□□ -1.26
SMC4-223	ENST00000493695	ZNF20	P17024	532 aa		7.18	□□□□□ -1.26
SMC4-223	ENST00000493695	CEP68	Q76N32	757 aa		7.18	□□□□□ -1.26
SMC4-223	ENST00000493695	LIMS2	Q7Z4I7	341 aa		7.18	□□□□□ -1.26
SMC4-223	ENST00000493695	TXNDC5	Q8NBS9	432 aa	Known RBP	7.18	□□□□□ -1.26
SMC4-223	ENST00000493695	SAMD11	Q96NU1	681 aa		7.18	□□□□□ -1.26
SMC4-223	ENST00000493695	RBM15	Q96T37	977 aa	Known RBP eCLIP	7.18	□□□□□ -1.26
SMC4-223	ENST00000493695	MMP19	Q99542	508 aa		7.18	□□□□□ -1.26
SMC4-223	ENST00000493695	SRRD	Q9UH36	339 aa		7.18	□□□□□ -1.26
SMC4-223	ENST00000493695	EMC9	Q9Y3B6	208 aa		7.18	□□□□□ -1.26
SMC4-223	ENST00000493695	MYO1B	O43795	1136 aa		7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	AKAP8	O43823	692 aa	Known RBP	7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	TNFRSF1A	P19438	455 aa		7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	RPL11	P62913	178 aa	Known RBP	7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	INF2	Q27J81	1249 aa		7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	FAM26F	Q5R3K3	315 aa		7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	C9orf131	Q5VYM1	1079 aa		7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	GTF2IRD2B	Q6EKJ0	949 aa		7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	GTF2IRD2	Q86UP8	949 aa		7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	COPS5	Q92905	334 aa		7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	ANAPC16	Q96DE5	110 aa		7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	LCOR	Q96JN0	433 aa	Predicted RBP	7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	ZSWIM3	Q96MP5	696 aa		7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	LGR4	Q9BXB1	951 aa		7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	JADE2	Q9NQC1	790 aa		7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	LRP2BP	Q9P2M1	347 aa		7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	TIMM13	Q9Y5L4	95 aa	Predicted RBP	7.17	□□□□□ -1.26
SMC4-223	ENST00000493695	MATN3	O15232	486 aa		7.16	□□□□□ -1.26
SMC4-223	ENST00000493695	ECI1	P42126	302 aa		7.16	□□□□□ -1.26
SMC4-223	ENST00000493695	ITGA1	P56199	1179 aa		7.16	□□□□□ -1.26
SMC4-223	ENST00000493695	NKX3-2	P78367	333 aa		7.16	□□□□□ -1.26
SMC4-223	ENST00000493695	KISS1R	Q969F8	398 aa	Predicted RBP	7.16	□□□□□ -1.26
SMC4-223	ENST00000493695	KRTAP9-8	Q9BYQ0	159 aa		7.16	□□□□□ -1.26
SMC4-223	ENST00000493695	L2HGDH	Q9H9P8	463 aa		7.16	□□□□□ -1.26
SMC4-223	ENST00000493695	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	7.16	□□□□□ -1.26
SMC4-223	ENST00000493695	COA3	Q9Y2R0	106 aa	Predicted RBP	7.16	□□□□□ -1.26
SMC4-223	ENST00000493695	SHD	Q96IW2	340 aa		7.15	□□□□□ -1.26
SMC4-223	ENST00000493695	BCL6	P41182	706 aa		7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	KCNJ6	P48051	423 aa		7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	SV2C	Q496J9	727 aa		7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	MROH9	Q5TGP6	573 aa		7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	IQCE	Q6IPM2	695 aa		7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	NT5DC4	Q86YG4	428 aa		7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	MIB1	Q86YT6	1006 aa		7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	FAM126B	Q8IXS8	530 aa		7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	TTC9B	Q8N6N2	239 aa		7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	DIO2	Q92813	273 aa		7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	DVL3	Q92997	716 aa	Predicted RBP	7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	TMEM169	Q96HH4	297 aa		7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	NGRN	Q9NPE2	291 aa	Known RBP	7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	CYP26B1	Q9NR63	512 aa		7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	CROT	Q9UKG9	612 aa		7.14	□□□□□ -1.27
SMC4-223	ENST00000493695	NPEPPSL1	A6NEC2	478 aa		7.13	□□□□□ -1.27
SMC4-223	ENST00000493695	RECK	O95980	971 aa		7.13	□□□□□ -1.27
SMC4-223	ENST00000493695	SNRPB2	P08579	225 aa	Known RBP	7.13	□□□□□ -1.27
SMC4-223	ENST00000493695	TRIM59	Q8IWR1	403 aa		7.13	□□□□□ -1.27
SMC4-223	ENST00000493695	SLC16A11	Q8NCK7	471 aa		7.13	□□□□□ -1.27
SMC4-223	ENST00000493695	RASGRP4	Q8TDF6	673 aa		7.13	□□□□□ -1.27
SMC4-223	ENST00000493695	FRS2	Q8WU20	508 aa		7.13	□□□□□ -1.27
SMC4-223	ENST00000493695	BTN2A2	Q8WVV5	523 aa		7.13	□□□□□ -1.27
SMC4-223	ENST00000493695	NKX2-4	Q9H2Z4	354 aa		7.13	□□□□□ -1.27
SMC4-223	ENST00000493695	ZBTB7C	A1YPR0	619 aa		7.12	□□□□□ -1.27
SMC4-223	ENST00000493695	MEFV	O15553	781 aa	Predicted RBP	7.12	□□□□□ -1.27
SMC4-223	ENST00000493695	LAMTOR5	O43504	91 aa		7.12	□□□□□ -1.27
SMC4-223	ENST00000493695	SLC6A11	P48066	632 aa		7.12	□□□□□ -1.27
SMC4-223	ENST00000493695	CASP7	P55210	303 aa		7.12	□□□□□ -1.27
SMC4-223	ENST00000493695	NCAPH	Q15003	741 aa		7.12	□□□□□ -1.27
SMC4-223	ENST00000493695	PLEKHH3	Q7Z736	793 aa		7.12	□□□□□ -1.27
SMC4-223	ENST00000493695	FAM169B	Q8N8A8	192 aa		7.12	□□□□□ -1.27
SMC4-223	ENST00000493695	ZNF513	Q8N8E2	541 aa	Predicted RBP	7.12	□□□□□ -1.27
SMC4-223	ENST00000493695	CLIC6	Q96NY7	704 aa		7.12	□□□□□ -1.27
SMC4-223	ENST00000493695	TMEM168	Q9H0V1	697 aa		7.12	□□□□□ -1.27
SMC4-223	ENST00000493695	C6	P13671	934 aa		7.11	□□□□□ -1.27
SMC4-223	ENST00000493695	GTF2A2	P52657	109 aa		7.11	□□□□□ -1.27
SMC4-223	ENST00000493695	ZNF143	P52747	638 aa	Predicted RBP	7.11	□□□□□ -1.27
SMC4-223	ENST00000493695	SURF1	Q15526	300 aa		7.11	□□□□□ -1.27
SMC4-223	ENST00000493695	CHRNA2	Q15822	529 aa		7.11	□□□□□ -1.27
SMC4-223	ENST00000493695	SPRED1	Q7Z699	444 aa		7.11	□□□□□ -1.27
SMC4-223	ENST00000493695	TOE1	Q96GM8	510 aa	Known RBP	7.11	□□□□□ -1.27
SMC4-223	ENST00000493695	DEF6	Q9H4E7	631 aa		7.11	□□□□□ -1.27
SMC4-223	ENST00000493695	ZDHHC9	Q9Y397	364 aa		7.11	□□□□□ -1.27
SMC4-223	ENST00000493695	PCDHA2	Q9Y5H9	948 aa		7.11	□□□□□ -1.27
SMC4-223	ENST00000493695	IL13	P35225	146 aa		7.1	□□□□□ -1.27
SMC4-223	ENST00000493695	GDF5	P43026	501 aa		7.1	□□□□□ -1.27
SMC4-223	ENST00000493695	CR1L	Q2VPA4	569 aa		7.1	□□□□□ -1.27
SMC4-223	ENST00000493695	LARP1B	Q659C4	914 aa	Known RBP	7.1	□□□□□ -1.27
SMC4-223	ENST00000493695	METTL16	Q86W50	562 aa	Known RBP	7.1	□□□□□ -1.27
SMC4-223	ENST00000493695	PALM2	Q8IXS6	379 aa		7.1	□□□□□ -1.27
SMC4-223	ENST00000493695	NPLOC4	Q8TAT6	608 aa		7.1	□□□□□ -1.27
SMC4-223	ENST00000493695	C1QTNF3	Q9BXJ4	246 aa		7.1	□□□□□ -1.27
SMC4-223	ENST00000493695	INPP5F	Q9Y2H2	1132 aa		7.1	□□□□□ -1.27
SMC4-223	ENST00000493695	PCDHB4	Q9Y5E5	795 aa		7.1	□□□□□ -1.27
SMC4-223	ENST00000493695	HGS	O14964	777 aa	Predicted RBP	7.09	□□□□□ -1.27
SMC4-223	ENST00000493695	B4GALT3	O60512	393 aa		7.09	□□□□□ -1.27
SMC4-223	ENST00000493695	MFAP1	P55081	439 aa	Known RBP	7.09	□□□□□ -1.27
SMC4-223	ENST00000493695	ADAM9	Q13443	819 aa		7.09	□□□□□ -1.27
SMC4-223	ENST00000493695	STEAP3	Q658P3	488 aa		7.09	□□□□□ -1.27
SMC4-223	ENST00000493695	E4F1	Q66K89	784 aa	Predicted RBP	7.09	□□□□□ -1.27
SMC4-223	ENST00000493695	ZNF585A	Q6P3V2	769 aa		7.09	□□□□□ -1.27

Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms