RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 PHKA1P46020 1223 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 ALX1Q15699 326 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 FAM133BQ5BKY9 247 aaKnown RBP12.89□□□□□ -0.35
HDAC4-210ENST00000493582 AP1ARQ63HQ0 302 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 SPDYE1Q8NFV5 336 aaPredicted RBP12.89□□□□□ -0.35
HDAC4-210ENST00000493582 AGAP11Q8TF27 550 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 RAPGEF4Q8WZA2 1011 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 HPS3Q969F9 1004 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 BATF3Q9NR55 127 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 IQSEC3Q9UPP2 1182 aaPredicted RBP12.89□□□□□ -0.35
HDAC4-210ENST00000493582 NID2Q14112 1375 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 ORC4O43929 436 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 DIAPH2O60879 1101 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 LCA5LO95447 670 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 PCCAP05165 728 aaPredicted RBP12.88□□□□□ -0.35
HDAC4-210ENST00000493582 PTPROQ16827 1216 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 THEMIS2Q5TEJ8 643 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 LRIG3Q6UXM1 1119 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 TMTC2Q8N394 836 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 P2RX5Q93086 422 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 CALR3Q96L12 384 aaKnown RBP12.88□□□□□ -0.35
HDAC4-210ENST00000493582 ZNF570Q96NI8 536 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 SH3GL3Q99963 347 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 DISC1Q9NRI5 854 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 FBXL5Q9UKA1 691 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 ARFGEF2Q9Y6D5 1785 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 FUT2Q10981 343 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 STK4Q13043 487 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 FIGNQ5HY92 759 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 LDHAL6AQ6ZMR3 332 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 RUFY4Q6ZNE9 571 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 SYNE4Q8N205 404 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 ISCUQ9H1K1 167 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 RNF14Q9UBS8 474 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 TNKSO95271 1327 aa12.88□□□□□ -0.35
HDAC4-210ENST00000493582 CTNND1O60716 968 aaKnown RBP12.87□□□□□ -0.35
HDAC4-210ENST00000493582 GHRP10912 638 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 FCER1AP12319 257 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 ADCY2Q08462 1091 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 IFIT5Q13325 482 aaKnown RBP12.87□□□□□ -0.35
HDAC4-210ENST00000493582 BIRC3Q13489 604 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 SNX1Q13596 522 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 TDRD12Q587J7 1177 aaKnown RBP12.87□□□□□ -0.35
HDAC4-210ENST00000493582 CCDC197Q8NCU1 140 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 YIPF3Q9GZM5 350 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 ZNF330Q9Y3S2 320 aaPredicted RBP12.87□□□□□ -0.35
HDAC4-210ENST00000493582 TBX22Q9Y458 520 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 PJA2O43164 708 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 RHOBTB3O94955 611 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 CCDC178Q5BJE1 867 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 ESCO1Q5FWF5 840 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 MIS18BP1Q6P0N0 1132 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 PROSER2Q86WR7 435 aaPredicted RBP12.87□□□□□ -0.35
HDAC4-210ENST00000493582 ZSCAN29Q8IWY8 852 aaPredicted RBP12.87□□□□□ -0.35
HDAC4-210ENST00000493582 CCDC155Q8N6L0 562 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 LRRC15Q8TF66 581 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 CHMP6Q96FZ7 201 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 INPP4AQ96PE3 977 aaPredicted RBP12.87□□□□□ -0.35
HDAC4-210ENST00000493582 PYM1Q9BRP8 204 aaKnown RBP12.87□□□□□ -0.35
HDAC4-210ENST00000493582 GGT7Q9UJ14 662 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 MINDY4BA8MYZ0 360 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 PRPF3O43395 683 aaKnown RBP12.87□□□□□ -0.35
HDAC4-210ENST00000493582 CCNE1P24864 410 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 KRT71Q3SY84 523 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 ARMC9Q7Z3E5 817 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 CCDC47Q96A33 483 aaKnown RBP12.87□□□□□ -0.35
HDAC4-210ENST00000493582 NLRP2Q9NX02 1062 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 SIK3Q9Y2K2 1263 aa12.87□□□□□ -0.35
HDAC4-210ENST00000493582 CLSTN1O94985 981 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 PAEPP09466 180 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 KLRC1P26715 233 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 NLRP5P59047 1200 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 PDE4DQ08499 809 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 NBPF20Q3BBV1 942 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 CRELD2Q6UXH1 353 aaPredicted RBP12.86□□□□□ -0.35
HDAC4-210ENST00000493582 USP38Q8NB14 1042 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 PRCCQ92733 491 aaPredicted RBP12.86□□□□□ -0.35
HDAC4-210ENST00000493582 P3H4Q92791 437 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 DHTKD1Q96HY7 919 aaPredicted RBP12.86□□□□□ -0.35
HDAC4-210ENST00000493582 AP1M1Q9BXS5 423 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 NDST4Q9H3R1 872 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 GOLPH3Q9H4A6 298 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 NLRC4Q9NPP4 1024 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 TSKSQ9UJT2 592 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 SMNDC1O75940 238 aaKnown RBP eCLIP12.86□□□□□ -0.35
HDAC4-210ENST00000493582 ITGA6P23229 1130 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 KCNJ2P63252 427 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 TNNC1P63316 161 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 ENOX2Q16206 610 aaKnown RBP12.86□□□□□ -0.35
HDAC4-210ENST00000493582 ASTE1Q2TB18 679 aaPredicted RBP12.86□□□□□ -0.35
HDAC4-210ENST00000493582 TAX1BP1Q86VP1 789 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 LCORLQ8N3X6 602 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 RNF10Q8N5U6 811 aaKnown RBP12.86□□□□□ -0.35
HDAC4-210ENST00000493582 MIGA1Q8NAN2 632 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 LRRC45Q96CN5 670 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 AGAP1Q9UPQ3 857 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 ATRNO75882 1429 aa12.86□□□□□ -0.35
HDAC4-210ENST00000493582 LONP1P36776 959 aaKnown RBP12.85□□□□□ -0.35
HDAC4-210ENST00000493582 CEBPAP49715 358 aaPredicted RBP12.85□□□□□ -0.35
HDAC4-210ENST00000493582 CCDC26Q8TAB7 109 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms