RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ZNF70Q9UC06 446 aaPredicted RBP12.04□□□□□ -0.48
USP4-214ENST00000491791 TMX2Q9Y320 296 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 PCDHA1Q9Y5I3 950 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.04□□□□□ -0.483e-7■■□□□ 13.3
USP4-214ENST00000491791 COL4A5P29400 1685 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 AKR1B15C9JRZ8 316 aaPredicted RBP12.03□□□□□ -0.48
USP4-214ENST00000491791 PSMD14O00487 310 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 TEX33O43247 280 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 TDP2O95551 362 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 SLC16A2P36021 539 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 TXKP42681 527 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 CACNB3P54284 484 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 ETF1P62495 437 aaKnown RBP12.03□□□□□ -0.48
USP4-214ENST00000491791 RRP1BQ14684 758 aaKnown RBP12.03□□□□□ -0.48
USP4-214ENST00000491791 TNIP1Q15025 636 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 DLGAP5Q15398 846 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 KRT79Q5XKE5 535 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 CENPPQ6IPU0 288 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 KLHL10Q6JEL2 608 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 CNGA4Q8IV77 575 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 ZSCAN29Q8IWY8 852 aaPredicted RBP12.03□□□□□ -0.48
USP4-214ENST00000491791 SLFN12Q8IYM2 578 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 SMYD4Q8IYR2 804 aaPredicted RBP12.03□□□□□ -0.48
USP4-214ENST00000491791 KIF18AQ8NI77 898 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 ZNF507Q8TCN5 953 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 RAD54LQ92698 747 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 IQCDQ96DY2 449 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 CSRNP1Q96S65 589 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 NT5C3AQ9H0P0 336 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 GPRC5DQ9NZD1 345 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 DDX25Q9UHL0 483 aaKnown RBP12.03□□□□□ -0.48
USP4-214ENST00000491791 PHLPP2Q6ZVD8 1323 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 KDM3AQ9Y4C1 1321 aa12.03□□□□□ -0.48
USP4-214ENST00000491791 MYH7BA7E2Y1 1941 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 KCNJ18B7U540 433 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 RRP9O43818 475 aaKnown RBP12.02□□□□□ -0.49
USP4-214ENST00000491791 GH2P01242 217 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 MAP2K2P36507 400 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 SREBF1P36956 1147 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 STX17P56962 302 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 JAG1P78504 1218 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 KCNJ12Q14500 433 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 CIAPIN1Q6FI81 312 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 FBXO11Q86XK2 927 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 GUF1Q8N442 669 aaKnown RBP12.02□□□□□ -0.49
USP4-214ENST00000491791 OGFOD1Q8N543 542 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 RASSF8Q8NHQ8 419 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 LARP4BQ92615 738 aaKnown RBP12.02□□□□□ -0.49
USP4-214ENST00000491791 P2RX5Q93086 422 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 FAM20AQ96MK3 541 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 DUSP9Q99956 384 aaKnown RBP12.02□□□□□ -0.49
USP4-214ENST00000491791 ANO3Q9BYT9 981 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 ARHGEF10LQ9HCE6 1279 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 GDAQ9Y2T3 454 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 TLL2Q9Y6L7 1015 aa12.02□□□□□ -0.49
USP4-214ENST00000491791 A0A1W2PRG0 241 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 LGALS16A8MUM7 142 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 TRAF5O00463 557 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 N4BP3O15049 544 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 MFAP3LO75121 409 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 TNNI2P48788 182 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 ZNF280AP59817 542 aaPredicted RBP12.01□□□□□ -0.49
USP4-214ENST00000491791 ATP2B2Q01814 1243 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 CXCL9Q07325 125 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 UBE2SQ16763 222 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 FIGNQ5HY92 759 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 CYP4F22Q6NT55 531 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 TRIM65Q6PJ69 517 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 PPFIBP1Q86W92 1011 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 FAM114A1Q8IWE2 563 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 RETREG2Q8NC44 543 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 ETNPPLQ8TBG4 499 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 ZC3H15Q8WU90 426 aaKnown RBP12.01□□□□□ -0.49
USP4-214ENST00000491791 ABHD8Q96I13 439 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 SH2D4AQ9H788 454 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.01□□□□□ -0.49
USP4-214ENST00000491791 EXOC1Q9NV70 894 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 PCDHA12Q9UN75 941 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 PPP2R2CQ9Y2T4 447 aa12.01□□□□□ -0.49
USP4-214ENST00000491791 FRMD3A2A2Y4 597 aa12□□□□□ -0.49
USP4-214ENST00000491791 MYMKA6NI61 221 aa12□□□□□ -0.49
USP4-214ENST00000491791 FAM196BA6NMK8 535 aa12□□□□□ -0.49
USP4-214ENST00000491791 OPLAHO14841 1288 aa12□□□□□ -0.49
USP4-214ENST00000491791 CA12O43570 354 aa12□□□□□ -0.49
USP4-214ENST00000491791 CELF2O95319 508 aaKnown RBP12□□□□□ -0.49
USP4-214ENST00000491791 SLURP2P0DP57 97 aa12□□□□□ -0.49
USP4-214ENST00000491791 RPS12P25398 132 aaKnown RBP12□□□□□ -0.49
USP4-214ENST00000491791 GMPSP49915 693 aaPredicted RBP12□□□□□ -0.49
USP4-214ENST00000491791 DNM2P50570 870 aa12□□□□□ -0.49
USP4-214ENST00000491791 GHRHRQ02643 423 aa12□□□□□ -0.49
USP4-214ENST00000491791 LRRC63Q05C16 580 aa12□□□□□ -0.49
USP4-214ENST00000491791 PDE4DQ08499 809 aa12□□□□□ -0.49
USP4-214ENST00000491791 RBL2Q08999 1139 aa12□□□□□ -0.49
USP4-214ENST00000491791 SPIRE1Q08AE8 756 aa12□□□□□ -0.49
USP4-214ENST00000491791 STK4Q13043 487 aa12□□□□□ -0.49
USP4-214ENST00000491791 SHROOM1Q2M3G4 852 aaPredicted RBP12□□□□□ -0.49
USP4-214ENST00000491791 CST9Q5W186 159 aa12□□□□□ -0.49
USP4-214ENST00000491791 TMTC1Q8IUR5 882 aa12□□□□□ -0.49
USP4-214ENST00000491791 CHURC1Q8WUH1 139 aa12□□□□□ -0.49
USP4-214ENST00000491791 ANKRD7Q92527 254 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms