RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 GTF3C6Q969F1 213 aa18.68■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 TSEN34Q9BSV6 310 aaKnown RBP18.68■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 BACH2Q9BYV9 841 aa18.68■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 EHMT1Q9H9B1 1298 aa18.68■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 PCDHA6Q9UN73 950 aa18.68■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 PCDHA8Q9Y5H6 950 aa18.68■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 KIAA1217Q5T5P2 1943 aa18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 DYNC1LI2O43237 492 aaPredicted RBP18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 ARIH2O95376 493 aa18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 TXNP10599 105 aaKnown RBP18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 PTGS1P23219 599 aa18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 IRX5P78411 483 aaPredicted RBP18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 PCNX4Q63HM2 1172 aa18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 NECAB1Q8N987 351 aa18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 SENP6Q9GZR1 1112 aaPredicted RBP18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 ZMYND12Q9H0C1 365 aa18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 C6orf50Q9HD87 102 aa18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 SH3GLB2Q9NR46 395 aa18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 VPS54Q9P1Q0 977 aa18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 LIMCH1Q9UPQ0 1083 aa18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 PHF24Q9UPV7 400 aa18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 STK36Q9NRP7 1315 aa18.67■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 MOXD2PA6NHM9 499 aa18.66■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 CTAGE5O15320 804 aa18.66■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 STAM2O75886 525 aa18.66■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 FOSP01100 380 aaPredicted RBP18.66■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 CLK2P49760 499 aaKnown RBP18.66■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 AP3B2Q13367 1082 aa18.66■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 KCNA10Q16322 511 aa18.66■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 CCSAPQ6IQ19 270 aaPredicted RBP18.66■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 XRRA1Q6P2D8 792 aa18.66■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 CCDC62Q6P9F0 684 aa18.66■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 PCSK9Q8NBP7 692 aaKnown RBP18.66■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 OR6J1Q8NGC5 347 aa18.66■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 MRVI1Q9Y6F6 885 aa18.66■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 RGS20O76081 388 aa18.65■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 CTDNEP1O95476 244 aa18.65■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 GNA11P29992 359 aa18.65■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 ACLYP53396 1101 aa18.65■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 MRPS9P82933 396 aaKnown RBP18.65■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 BEX3Q00994 111 aa18.65■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 FSCN1Q16658 493 aaKnown RBP18.65■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 LY6KQ17RY6 165 aa18.65■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 GNASQ5JWF2 1037 aa18.65■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 DPF3Q92784 378 aa18.65■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 COPS5Q92905 334 aa18.65■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 ZFP91Q96JP5 570 aaPredicted RBP18.65■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 ANO3Q9BYT9 981 aa18.65■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 A0A1W2PQ45 241 aaPredicted RBP18.64■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 A0A1W2PQY0 241 aa18.64■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 ST18O60284 1047 aa18.64■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 ZEB2O60315 1214 aa18.64■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 ASGR1P07306 291 aa18.64■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 GNPTABQ3T906 1256 aa18.64■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 KCNV1Q6PIU1 500 aa18.64■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 IL27Q8NEV9 243 aa18.64■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 BICD2Q8TD16 824 aa18.64■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 FERMT2Q96AC1 680 aa18.64■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 PGBD1Q96JS3 809 aa18.64■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 ZSCAN31Q96LW9 406 aaPredicted RBP18.64■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 INPP4AQ96PE3 977 aaPredicted RBP18.64■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 TMEM260Q9NX78 707 aa18.64■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 DDX41Q9UJV9 622 aaKnown RBP18.64■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 ALPK3Q96L96 1907 aa18.63■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 GH1P01241 217 aa18.63■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 CPT1AP50416 773 aa18.63■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 ATN1P54259 1190 aaPredicted RBP18.63■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 NLRP5P59047 1200 aa18.63■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 ST3GAL1Q11201 340 aa18.63■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 LRRC26Q2I0M4 334 aa18.63■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 JAKMIP3Q5VZ66 844 aa18.63■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 MCTP2Q6DN12 878 aa18.63■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 FAM177A1Q8N128 213 aaPredicted RBP18.63■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 REXO1Q8N1G1 1221 aaKnown RBP18.63■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 NSUN7Q8NE18 718 aaKnown RBP18.63■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 AIFM3Q96NN9 605 aa18.63■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 RTEL1Q9NZ71 1219 aa18.63■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 ORC3Q9UBD5 711 aaPredicted RBP18.63■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 EVI5O60447 810 aa18.62■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 TGFB3P10600 412 aa18.62■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 BRDTQ58F21 947 aaPredicted RBP18.62■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 SLC39A5Q6ZMH5 540 aa18.62■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 NLRX1Q86UT6 975 aa18.62■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 WASF1Q92558 559 aa18.62■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 GLT1D1Q96MS3 346 aa18.62■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 STARD7Q9NQZ5 370 aa18.62■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 SH2B1Q9NRF2 756 aaPredicted RBP18.62■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 ADAMTS3O15072 1205 aa18.61■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 FIBPO43427 364 aa18.61■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 DTNBO60941 627 aa18.61■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 XBP1P17861 261 aa18.61■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 ICAM3P32942 547 aa18.61■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 SREBF1P36956 1147 aa18.61■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 ARHGAP1Q07960 439 aa18.61■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 SNX17Q15036 470 aa18.61■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 CCDC83Q8IWF9 413 aa18.61■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 MKI67P46013 3256 aaKnown RBP18.61■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 ELP1O95163 1332 aa18.6■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 SPATA31C2B4DYI2 1134 aa18.6■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 CABYRO75952 493 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms