RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 TRAPPC10P48553 1259 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 TIMM10P62072 90 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 CCT2P78371 535 aaKnown RBP6.63□□□□□ -1.35
VPS41-214ENST00000490924 SPAG1Q07617 926 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 SF3B2Q13435 895 aaKnown RBP6.63□□□□□ -1.35
VPS41-214ENST00000490924 TRIM14Q14142 442 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 TEX35Q5T0J7 233 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 KRT40Q6A162 431 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 TRIM65Q6PJ69 517 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 KIF6Q6ZMV9 814 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 TMC6Q7Z403 805 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 ANKMY2Q8IV38 441 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 IGDCC4Q8TDY8 1250 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 STAG1Q8WVM7 1258 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 LPIN2Q92539 896 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 UBXN4Q92575 508 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 FERMT2Q96AC1 680 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 CALR3Q96L12 384 aaKnown RBP6.63□□□□□ -1.35
VPS41-214ENST00000490924 NCOA5Q9HCD5 579 aaKnown RBP6.63□□□□□ -1.35
VPS41-214ENST00000490924 ANAPC4Q9UJX5 808 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 KCNH3Q9ULD8 1083 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 NWD2Q9ULI1 1742 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 RTCBQ9Y3I0 505 aaKnown RBP6.63□□□□□ -1.35
VPS41-214ENST00000490924 SRPRBQ9Y5M8 271 aaKnown RBP6.63□□□□□ -1.35
VPS41-214ENST00000490924 MAFBQ9Y5Q3 323 aaPredicted RBP6.63□□□□□ -1.35
VPS41-214ENST00000490924 ARAP2Q8WZ64 1704 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 CICQ96RK0 1608 aaPredicted RBP6.62□□□□□ -1.35
VPS41-214ENST00000490924 BCL9LQ86UU0 1499 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 MROH7-TTC4A0A0A0MT08 1334 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 PDS5AQ29RF7 1337 aaKnown RBP6.62□□□□□ -1.35
VPS41-214ENST00000490924 TCRBV5S4A2TA0A5A2 114 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 LRRC10BA6NIK2 292 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 KIF28PB7ZC32 967 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 PATL2C9JE40 543 aaKnown RBP6.62□□□□□ -1.35
VPS41-214ENST00000490924 WDHD1O75717 1129 aaPredicted RBP6.62□□□□□ -1.35
VPS41-214ENST00000490924 PDE8BO95263 885 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 MMP1P03956 469 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 MYL1P05976 194 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 IL2RBP14784 551 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 FGFR2P21802 821 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 CEBPZQ03701 1054 aaKnown RBP6.62□□□□□ -1.35
VPS41-214ENST00000490924 SSRP1Q08945 709 aaKnown RBP6.62□□□□□ -1.35
VPS41-214ENST00000490924 GPS2Q13227 327 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 MORC3Q14149 939 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 BRD3Q15059 726 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 PUM3Q15397 648 aaKnown RBP6.62□□□□□ -1.35
VPS41-214ENST00000490924 ELF2Q15723 593 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 LRRC24Q50LG9 513 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 MUM1L1Q5H9M0 696 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 INTS5Q6P9B9 1019 aaKnown RBP6.62□□□□□ -1.35
VPS41-214ENST00000490924 SHC4Q6S5L8 630 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 TMCO3Q6UWJ1 677 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 ZNF662Q6ZS27 426 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 TTLL7Q6ZT98 887 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 RSRC2Q7L4I2 434 aaKnown RBP6.62□□□□□ -1.35
VPS41-214ENST00000490924 TMEM139Q8IV31 216 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 REXO1L1PQ8IX06 675 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 RGL4Q8IZJ4 473 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 CNNM3Q8NE01 707 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 GLMNQ92990 594 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 IQCDQ96DY2 449 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 GSDMAQ96QA5 445 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 STRBPQ96SI9 672 aaKnown RBP6.62□□□□□ -1.35
VPS41-214ENST00000490924 RNF26Q9BY78 433 aaPredicted RBP6.62□□□□□ -1.35
VPS41-214ENST00000490924 LRRC2Q9BYS8 371 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 NACAP1Q9BZK3 213 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 FTOQ9C0B1 505 aaKnown RBP eCLIP6.62□□□□□ -1.35
VPS41-214ENST00000490924 LY9Q9HBG7 655 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 AATFQ9NY61 560 aaKnown RBP eCLIP6.62□□□□□ -1.35
VPS41-214ENST00000490924 ZFATQ9P243 1243 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 DMGDHQ9UI17 866 aaKnown RBP6.62□□□□□ -1.35
VPS41-214ENST00000490924 FHOD1Q9Y613 1164 aa6.62□□□□□ -1.35
VPS41-214ENST00000490924 DISP2A7MBM2 1401 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 UBN2Q6ZU65 1347 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 MYH7P12883 1935 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 ANKRD18BA2A2Z9 1011 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 ZBTB42B2RXF5 422 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 F8W735 103 aaPredicted RBP6.61□□□□□ -1.35
VPS41-214ENST00000490924 SERPINC1P01008 464 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 IGLV1-40P01703 118 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 POLR3DP05423 398 aaPredicted RBP6.61□□□□□ -1.35
VPS41-214ENST00000490924 PNMA6AP0CW24 399 aaPredicted RBP6.61□□□□□ -1.35
VPS41-214ENST00000490924 CALM1P0DP23 149 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 CALM2P0DP24 149 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 CALM3P0DP25 149 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 PDE6AP16499 860 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 MCM3P25205 808 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 CYP2C19P33261 490 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 ZAP70P43403 619 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 USP5P45974 858 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 PLCD1P51178 756 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 CTSWP56202 376 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 ZC3H6P61129 1189 aaKnown RBP6.61□□□□□ -1.35
VPS41-214ENST00000490924 FKBP4Q02790 459 aaKnown RBP eCLIP6.61□□□□□ -1.35
VPS41-214ENST00000490924 MAP3K12Q12852 859 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 GNL2Q13823 731 aaKnown RBP6.61□□□□□ -1.35
VPS41-214ENST00000490924 POSTNQ15063 836 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 GRIK5Q16478 980 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 CFAP100Q494V2 611 aa6.61□□□□□ -1.35
VPS41-214ENST00000490924 TAF7LQ5H9L4 462 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms