RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 ABCC12Q96J65 1359 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 ERVV-2B6SEH9 535 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 RPL13P26373 211 aaKnown RBP14.07□□□□□ -0.16
SHOX2-205ENST00000490689 KIRREL3Q8IZU9 778 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 MARCH10Q8NA82 808 aaPredicted RBP14.07□□□□□ -0.16
SHOX2-205ENST00000490689 TBCKQ8TEA7 893 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 ZNF473Q8WTR7 871 aaKnown RBP14.07□□□□□ -0.16
SHOX2-205ENST00000490689 GOLPH3Q9H4A6 298 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 EPB41L4AQ9HCS5 686 aaPredicted RBP14.07□□□□□ -0.16
SHOX2-205ENST00000490689 KIDINS220Q9ULH0 1771 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 PPLO60437 1756 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 USP17L3A6NCW0 530 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 USP17L4A6NCW7 530 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 CLGNO14967 610 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 ATP2C1P98194 919 aaPredicted RBP14.07□□□□□ -0.16
SHOX2-205ENST00000490689 OTUD6AQ7L8S5 288 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 USP17L1Q7RTZ2 530 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 DDX42Q86XP3 938 aaKnown RBP eCLIP14.07□□□□□ -0.16
SHOX2-205ENST00000490689 WHAMMQ8TF30 809 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 RAB17Q9H0T7 212 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 MLXIPLQ9NP71 852 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 KNDC1Q76NI1 1749 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 GMNCA6NCL1 334 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 PGRMC1O00264 195 aaKnown RBP14.07□□□□□ -0.16
SHOX2-205ENST00000490689 GCNT3O95395 438 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 USP17L8P0C7I0 530 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 XRCC5P13010 732 aaKnown RBP14.07□□□□□ -0.16
SHOX2-205ENST00000490689 SESN3P58005 492 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 SLC20A2Q08357 652 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 TXNRD1Q16881 649 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 GJA10Q969M2 543 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 NAP1L3Q99457 506 aaPredicted RBP14.07□□□□□ -0.16
SHOX2-205ENST00000490689 HAUS2Q9NVX0 235 aa14.07□□□□□ -0.16
SHOX2-205ENST00000490689 SPDYE3A6NKU9 549 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 ADCY7P51828 1080 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 MYO1EQ12965 1108 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 STK4Q13043 487 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 CAPN12Q6ZSI9 719 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 THOC1Q96FV9 657 aaKnown RBP14.06□□□□□ -0.16
SHOX2-205ENST00000490689 ATP6V1G3Q96LB4 118 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 PCDHA12Q9UN75 941 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 CAPN6Q9Y6Q1 641 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 STAT1P42224 750 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 HDLBPQ00341 1268 aaKnown RBP14.06□□□□□ -0.16
SHOX2-205ENST00000490689 FKBP3Q00688 224 aaKnown RBP14.06□□□□□ -0.16
SHOX2-205ENST00000490689 TRIM7Q9C029 511 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 SUFUQ9UMX1 484 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 STX2P32856 288 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 KCTD19Q17RG1 926 aaPredicted RBP14.06□□□□□ -0.16
SHOX2-205ENST00000490689 TMEM139Q8IV31 216 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 ADSSL1Q8N142 457 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 KLHL29Q96CT2 875 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 IQCDQ96DY2 449 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 PLVAPQ9BX97 442 aa14.06□□□□□ -0.16
SHOX2-205ENST00000490689 DNAJC17Q9NVM6 304 aaKnown RBP14.06□□□□□ -0.16
SHOX2-205ENST00000490689 A0A087X0B3 334 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 MRPL12P52815 198 aaKnown RBP14.05□□□□□ -0.16
SHOX2-205ENST00000490689 TAOK1Q7L7X3 1001 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 ARHGEF2Q92974 986 aaKnown RBP14.05□□□□□ -0.16
SHOX2-205ENST00000490689 CUL5Q93034 780 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 PKD2L1Q9P0L9 805 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 KIAA1024Q9UPX6 916 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 ITIH6Q6UXX5 1313 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 ZSCAN5CA6NGD5 496 aaPredicted RBP14.05□□□□□ -0.16
SHOX2-205ENST00000490689 PHF20L1A8MW92 1017 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 ZNF131P52739 623 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 NTRK3Q16288 839 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 USP17L2Q6R6M4 530 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 PLEKHG2Q9H7P9 1386 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 NR2F2P24468 414 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 CYP4A11Q02928 519 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 EARS2Q5JPH6 523 aaKnown RBP14.05□□□□□ -0.16
SHOX2-205ENST00000490689 SYCE1Q8N0S2 351 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 SRBD1Q8N5C6 995 aaKnown RBP14.05□□□□□ -0.16
SHOX2-205ENST00000490689 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.05□□□□□ -0.16
SHOX2-205ENST00000490689 ZBTB21Q9ULJ3 1066 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 XDHP47989 1333 aa14.05□□□□□ -0.16
SHOX2-205ENST00000490689 A0A1W2PQC6 194 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 MDH1P40925 334 aaKnown RBP14.04□□□□□ -0.16
SHOX2-205ENST00000490689 HERVK_113P62684 666 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 MXRA7P84157 204 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 EXOC3L4Q17RC7 722 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 ARL6IP4Q66PJ3 421 aaKnown RBP14.04□□□□□ -0.16
SHOX2-205ENST00000490689 LRRC47Q8N1G4 583 aaKnown RBP14.04□□□□□ -0.16
SHOX2-205ENST00000490689 HVCN1Q96D96 273 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 EPN3Q9H201 632 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 DAAM1Q9Y4D1 1078 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 MROH1Q8NDA8 1641 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 POTEMA6NI47 508 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 CCDC169A6NNP5 214 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 HIP1RO75146 1068 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 MYBL2P10244 700 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 COA7Q96BR5 231 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 SETDB2Q96T68 719 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 EYA3Q99504 573 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 ACTR5Q9H9F9 607 aaPredicted RBP14.04□□□□□ -0.16
SHOX2-205ENST00000490689 COL4A3BPQ9Y5P4 624 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 CYP2J2P51589 502 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 GSTO1P78417 241 aa14.04□□□□□ -0.16
SHOX2-205ENST00000490689 TMEM132AQ24JP5 1023 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms