RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 ERICH2A1L162 156 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 SLC27A2O14975 620 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 HOXD8P13378 290 aaPredicted RBP11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 LIFRP42702 1097 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 TSGA10IPQ3SY00 556 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 CATIPQ7Z7H3 387 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 SESTD1Q86VW0 696 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 TMTC2Q8N394 836 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 HERVK_113Q902F9 699 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 TMEM87BQ96K49 555 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 PIGSQ96S52 555 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 PDCD2LQ9BRP1 358 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 SPZ1Q9BXG8 430 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 WNT8AQ9H1J5 351 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 TTYH1Q9H313 450 aaPredicted RBP11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 HIPK3Q9H422 1215 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 IL23AQ9NPF7 189 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 GPHNQ9NQX3 736 aaPredicted RBP11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 UMODL1Q5DID0 1318 aa11.29□□□□□ -0.6
TMEM39A-210ENST00000490099 COL6A3P12111 3177 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 SH2B2O14492 632 aaPredicted RBP11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 MAP3K13O43283 966 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 DHX16O60231 1041 aaKnown RBP11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 DDAH1O94760 285 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 CFBP00751 764 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 GH1P01241 217 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 SUPT20HL2P0C7V6 817 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 MCM5P33992 734 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 LY6KQ17RY6 165 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 NBPF20Q3BBV1 942 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 BRDTQ58F21 947 aaPredicted RBP11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 ARHGEF16Q5VV41 709 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 CREB3L3Q68CJ9 461 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 SEPT14Q6ZU15 432 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 ZNF365Q70YC5 407 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 ZNF654Q8IZM8 581 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 AFG1LQ8WV93 481 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 KAT2BQ92831 832 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 CTAGE1Q96RT6 745 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 LZTS2Q9BRK4 669 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 FRMPD4Q14CM0 1322 aa11.28□□□□□ -0.6
TMEM39A-210ENST00000490099 MYH6P13533 1939 aa11.27□□□□□ -0.6
TMEM39A-210ENST00000490099 HAS3O00219 553 aa11.27□□□□□ -0.61
TMEM39A-210ENST00000490099 PRC1O43663 620 aa11.27□□□□□ -0.61
TMEM39A-210ENST00000490099 MYL3P08590 195 aa11.27□□□□□ -0.61
TMEM39A-210ENST00000490099 TGFB3P10600 412 aa11.27□□□□□ -0.61
TMEM39A-210ENST00000490099 EIF2AK2P19525 551 aaKnown RBP11.27□□□□□ -0.61
TMEM39A-210ENST00000490099 LAMC2Q13753 1193 aa11.27□□□□□ -0.61
TMEM39A-210ENST00000490099 ZNF697Q5TEC3 545 aa11.27□□□□□ -0.61
TMEM39A-210ENST00000490099 PSRC1Q6PGN9 363 aaPredicted RBP11.27□□□□□ -0.61
TMEM39A-210ENST00000490099 SGMS1Q86VZ5 419 aa11.27□□□□□ -0.61
TMEM39A-210ENST00000490099 SKAP1Q86WV1 359 aa11.27□□□□□ -0.61
TMEM39A-210ENST00000490099 IL31RAQ8NI17 732 aa11.27□□□□□ -0.61
TMEM39A-210ENST00000490099 RNF25Q96BH1 459 aaPredicted RBP11.27□□□□□ -0.61
TMEM39A-210ENST00000490099 CDX2Q99626 313 aaPredicted RBP11.27□□□□□ -0.61
TMEM39A-210ENST00000490099 PPP1R12CQ9BZL4 782 aa11.27□□□□□ -0.61
TMEM39A-210ENST00000490099 TRMT13Q9NUP7 481 aaKnown RBP11.27□□□□□ -0.61
TMEM39A-210ENST00000490099 GCOM1H8Y6P7 765 aaPredicted RBP11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 PIK3CDO00329 1044 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 PPFIA4O75335 1185 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 NEFLP07196 543 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 MMP3P08254 477 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 POLR2MP0CAP2 368 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 ACRP10323 421 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 CYP2C9P11712 490 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 HOXA13P31271 388 aaPredicted RBP11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 ICAM3P32942 547 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 KIF5BP33176 963 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 GNAQP50148 359 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 EXOSC10Q01780 885 aaKnown RBP11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 RBL2Q08999 1139 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 PGM5Q15124 567 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 CELF3Q5SZQ8 465 aaKnown RBP11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 MYSM1Q5VVJ2 828 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 KCNV1Q6PIU1 500 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 HOMER1Q86YM7 354 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 SRBD1Q8N5C6 995 aaKnown RBP11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 PPTC7Q8NI37 304 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 KCNB2Q92953 911 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 KIAA1217Q5T5P2 1943 aa11.26□□□□□ -0.61
TMEM39A-210ENST00000490099 SPATA31C2B4DYI2 1134 aa11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 MEIS2O14770 477 aa11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 STAM2O75886 525 aa11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 F2P00734 622 aa11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 FGBP02675 491 aa11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 PFKMP08237 780 aa11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 IQCF3P0C7M6 154 aa11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 CALM1P0DP23 149 aa11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 CALM2P0DP24 149 aa11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 CALM3P0DP25 149 aa11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 CASTP20810 708 aaKnown RBP11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 CLCN6P51797 869 aa11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 MRPS9P82933 396 aaKnown RBP11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 SP2Q02086 613 aa11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 GPNMBQ14956 572 aa11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 RPUSD2Q8IZ73 545 aaKnown RBP11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 CTCFLQ8NI51 663 aaPredicted RBP11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 INPP4AQ96PE3 977 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms