RNA–Protein interactions for RNA: ENST00000489554.1

SCAMP4-208, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 3

Gene SCAMP4, Length 573 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-208ENST00000489554 TRIM43Q96BQ3 446 aaPredicted RBP12.18□□□□□ -0.46
SCAMP4-208ENST00000489554 ZSCAN31Q96LW9 406 aaPredicted RBP12.18□□□□□ -0.46
SCAMP4-208ENST00000489554 TAAR1Q96RJ0 339 aa12.18□□□□□ -0.46
SCAMP4-208ENST00000489554 PIGSQ96S52 555 aa12.18□□□□□ -0.46
SCAMP4-208ENST00000489554 RMDN3Q96TC7 470 aa12.18□□□□□ -0.46
SCAMP4-208ENST00000489554 LZTS2Q9BRK4 669 aa12.18□□□□□ -0.46
SCAMP4-208ENST00000489554 SH2B1Q9NRF2 756 aaPredicted RBP12.18□□□□□ -0.46
SCAMP4-208ENST00000489554 TMEM39AQ9NV64 488 aa12.18□□□□□ -0.46
SCAMP4-208ENST00000489554 PCDH10Q9P2E7 1040 aa12.18□□□□□ -0.46
SCAMP4-208ENST00000489554 SLC12A7Q9Y666 1083 aa12.18□□□□□ -0.46
SCAMP4-208ENST00000489554 PNMA6FA0A0J9YX94 578 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 TLR3O15455 904 aaKnown RBP12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 ZBTB43O43298 467 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 CYTH3O43739 400 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 PPP1R11O60927 126 aaPredicted RBP12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 CALM1P0DP23 149 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 CALM2P0DP24 149 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 CALM3P0DP25 149 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 RAG1P15918 1043 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 SMARCA1P28370 1054 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 GNAQP50148 359 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 CPT1AP50416 773 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 TTLL4Q14679 1199 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 STXBP2Q15833 593 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 ARHGEF16Q5VV41 709 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 GPR153Q6NV75 609 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 MICU3Q86XE3 530 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 CCDC83Q8IWF9 413 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 OR6J1Q8NGC5 347 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 BADQ92934 168 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 SPZ1Q9BXG8 430 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 POLR3EQ9NVU0 708 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 COL20A1Q9P218 1284 aa12.17□□□□□ -0.46
SCAMP4-208ENST00000489554 GOLGA8AA7E2F4 631 aa12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 SOX1O00570 391 aaPredicted RBP12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 OPLAHO14841 1288 aa12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 PLEKHA8P1O95397 391 aa12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 TXNP10599 105 aaKnown RBP12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 PTGS1P23219 599 aa12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 ADD1P35611 737 aaKnown RBP12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 METAP2P50579 478 aaKnown RBP eCLIP12.16□□□□□ -0.464e-7■■□□□ 12
SCAMP4-208ENST00000489554 CCT2P78371 535 aaKnown RBP12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 TMEM63BQ5T3F8 832 aa12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 FAM126BQ8IXS8 530 aa12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 FANCBQ8NB91 859 aa12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 SLC43A3Q8NBI5 491 aa12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 RRP36Q96EU6 259 aaKnown RBP12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 ANP32EQ9BTT0 268 aa12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 PXMP2Q9NR77 195 aa12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 TBX21Q9UL17 535 aa12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 LTBP2Q14767 1821 aa12.16□□□□□ -0.46
SCAMP4-208ENST00000489554 GCOM1H8Y6P7 765 aaPredicted RBP12.15□□□□□ -0.46
SCAMP4-208ENST00000489554 KPNA6O60684 536 aa12.15□□□□□ -0.46
SCAMP4-208ENST00000489554 EIF3JO75822 258 aaKnown RBP12.15□□□□□ -0.46
SCAMP4-208ENST00000489554 NR3C2P08235 984 aa12.15□□□□□ -0.46
SCAMP4-208ENST00000489554 POLR2MP0CAP2 368 aa12.15□□□□□ -0.46
SCAMP4-208ENST00000489554 EIF2AK2P19525 551 aaKnown RBP12.15□□□□□ -0.46
SCAMP4-208ENST00000489554 ITGB8P26012 769 aa12.15□□□□□ -0.46
SCAMP4-208ENST00000489554 ITGA7Q13683 1181 aa12.15□□□□□ -0.46
SCAMP4-208ENST00000489554 TMTC3Q6ZXV5 915 aa12.15□□□□□ -0.46
SCAMP4-208ENST00000489554 NSUN7Q8NE18 718 aaKnown RBP12.15□□□□□ -0.46
SCAMP4-208ENST00000489554 SMARCC2Q8TAQ2 1214 aa12.15□□□□□ -0.46
SCAMP4-208ENST00000489554 LRCH3Q96II8 777 aa12.15□□□□□ -0.46
SCAMP4-208ENST00000489554 SLKQ9H2G2 1235 aaPredicted RBP12.15□□□□□ -0.46
SCAMP4-208ENST00000489554 SEC63Q9UGP8 760 aaKnown RBP12.15□□□□□ -0.46
SCAMP4-208ENST00000489554 CNTNAP5Q8WYK1 1306 aa12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 A6NJR5 290 aa12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 JAK2O60674 1132 aa12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 TIMP1P01033 207 aa12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 GH1P01241 217 aa12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 CD4P01730 458 aa12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 MYL3P08590 195 aa12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 FDPSP14324 419 aaKnown RBP12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 DDIT3P35638 169 aa12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 PURAQ00577 322 aaKnown RBP12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 FPGSQ05932 587 aa12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 RTN1Q16799 776 aa12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 CCDC62Q6P9F0 684 aa12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 SYNE3Q6ZMZ3 975 aa12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 SEPT14Q6ZU15 432 aa12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 CMTR1Q8N1G2 835 aaKnown RBP12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 SRBD1Q8N5C6 995 aaKnown RBP12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 INTS4Q96HW7 963 aaKnown RBP12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 PDCD2LQ9BRP1 358 aa12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 MTG1Q9BT17 334 aaPredicted RBP12.14□□□□□ -0.47
SCAMP4-208ENST00000489554 GRIN2DO15399 1336 aa12.13□□□□□ -0.47
SCAMP4-208ENST00000489554 DNAH12Q6ZR08 3092 aa12.13□□□□□ -0.47
SCAMP4-208ENST00000489554 ARIH2O95376 493 aa12.13□□□□□ -0.47
SCAMP4-208ENST00000489554 IFNAR1P17181 557 aa12.13□□□□□ -0.47
SCAMP4-208ENST00000489554 HOXA13P31271 388 aaPredicted RBP12.13□□□□□ -0.47
SCAMP4-208ENST00000489554 PSMC6P62333 389 aa12.13□□□□□ -0.47
SCAMP4-208ENST00000489554 SHHQ15465 462 aa12.13□□□□□ -0.47
SCAMP4-208ENST00000489554 MFSD5Q6N075 450 aa12.13□□□□□ -0.47
SCAMP4-208ENST00000489554 KCNV1Q6PIU1 500 aa12.13□□□□□ -0.47
SCAMP4-208ENST00000489554 PIBF1Q8WXW3 757 aa12.13□□□□□ -0.47
SCAMP4-208ENST00000489554 COPS5Q92905 334 aa12.13□□□□□ -0.47
SCAMP4-208ENST00000489554 NAP1L2Q9ULW6 460 aaPredicted RBP12.13□□□□□ -0.47
SCAMP4-208ENST00000489554 MYH6P13533 1939 aa12.13□□□□□ -0.47
SCAMP4-208ENST00000489554 BAZ2BQ9UIF8 2168 aaKnown RBP12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 PPFIA3O75145 1194 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms