RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 LRRC37A2A6NM11 1700 aa17.24■□□□□ 0.35
TRIM54-204ENST00000488321 SMCHD1A6NHR9 2005 aa17.23■□□□□ 0.35
TRIM54-204ENST00000488321 PIK3CDO00329 1044 aa17.23■□□□□ 0.35
TRIM54-204ENST00000488321 MEIS2O14770 477 aa17.23■□□□□ 0.35
TRIM54-204ENST00000488321 EIF5BO60841 1220 aaKnown RBP17.23■□□□□ 0.35
TRIM54-204ENST00000488321 PSMC6P62333 389 aa17.23■□□□□ 0.35
TRIM54-204ENST00000488321 FUT2Q10981 343 aa17.23■□□□□ 0.35
TRIM54-204ENST00000488321 UBE2SQ16763 222 aa17.23■□□□□ 0.35
TRIM54-204ENST00000488321 ANKRD33Q7Z3H0 272 aa17.23■□□□□ 0.35
TRIM54-204ENST00000488321 SH3RF1Q7Z6J0 888 aa17.23■□□□□ 0.35
TRIM54-204ENST00000488321 UBE2OQ9C0C9 1292 aaKnown RBP17.23■□□□□ 0.35
TRIM54-204ENST00000488321 PDRG1Q9NUG6 133 aa17.23■□□□□ 0.35
TRIM54-204ENST00000488321 TMEM39AQ9NV64 488 aa17.23■□□□□ 0.35
TRIM54-204ENST00000488321 LCTP09848 1927 aa17.23■□□□□ 0.35
TRIM54-204ENST00000488321 MROH7Q68CQ1 1323 aa17.22■□□□□ 0.35
TRIM54-204ENST00000488321 SPDYE3A6NKU9 549 aa17.22■□□□□ 0.35
TRIM54-204ENST00000488321 SORBS3O60504 671 aa17.22■□□□□ 0.35
TRIM54-204ENST00000488321 CCT2P78371 535 aaKnown RBP17.22■□□□□ 0.35
TRIM54-204ENST00000488321 ITGA7Q13683 1181 aa17.22■□□□□ 0.35
TRIM54-204ENST00000488321 TOB2Q14106 344 aaPredicted RBP17.22■□□□□ 0.35
TRIM54-204ENST00000488321 GNPTABQ3T906 1256 aa17.22■□□□□ 0.35
TRIM54-204ENST00000488321 AFG1LQ8WV93 481 aa17.22■□□□□ 0.35
TRIM54-204ENST00000488321 TOX2Q96NM4 488 aa17.22■□□□□ 0.35
TRIM54-204ENST00000488321 LARP6Q9BRS8 491 aaKnown RBP17.22■□□□□ 0.35
TRIM54-204ENST00000488321 PRO3102Q9H379 93 aa17.22■□□□□ 0.35
TRIM54-204ENST00000488321 RTEL1Q9NZ71 1219 aa17.22■□□□□ 0.35
TRIM54-204ENST00000488321 DDX41Q9UJV9 622 aaKnown RBP17.22■□□□□ 0.35
TRIM54-204ENST00000488321 DNAH12Q6ZR08 3092 aa17.21■□□□□ 0.35
TRIM54-204ENST00000488321 TRIM43BA6NCK2 446 aa17.21■□□□□ 0.35
TRIM54-204ENST00000488321 A6NJR5 290 aa17.21■□□□□ 0.35
TRIM54-204ENST00000488321 TLR3O15455 904 aaKnown RBP17.21■□□□□ 0.35
TRIM54-204ENST00000488321 PPFIA3O75145 1194 aa17.21■□□□□ 0.35
TRIM54-204ENST00000488321 RGS20O76081 388 aa17.21■□□□□ 0.35
TRIM54-204ENST00000488321 PDIA3P30101 505 aaKnown RBP17.21■□□□□ 0.35
TRIM54-204ENST00000488321 CDK7P50613 346 aa17.21■□□□□ 0.35
TRIM54-204ENST00000488321 CHMP4BP1P59074 171 aa17.21■□□□□ 0.35
TRIM54-204ENST00000488321 PURAQ00577 322 aaKnown RBP17.21■□□□□ 0.35
TRIM54-204ENST00000488321 AKAP17AQ02040 695 aaKnown RBP17.21■□□□□ 0.35
TRIM54-204ENST00000488321 ARHGAP1Q07960 439 aa17.21■□□□□ 0.35
TRIM54-204ENST00000488321 FAAP100Q0VG06 881 aa17.21■□□□□ 0.35
TRIM54-204ENST00000488321 PPP1R18Q6NYC8 613 aa17.21■□□□□ 0.35
TRIM54-204ENST00000488321 KCNV1Q6PIU1 500 aa17.21■□□□□ 0.35
TRIM54-204ENST00000488321 DHX37Q8IY37 1157 aaKnown RBP17.21■□□□□ 0.35
TRIM54-204ENST00000488321 TRIM43Q96BQ3 446 aaPredicted RBP17.21■□□□□ 0.35
TRIM54-204ENST00000488321 MTG1Q9BT17 334 aaPredicted RBP17.21■□□□□ 0.35
TRIM54-204ENST00000488321 NCOA5Q9HCD5 579 aaKnown RBP17.21■□□□□ 0.35
TRIM54-204ENST00000488321 FRMPD4Q14CM0 1322 aa17.21■□□□□ 0.34
TRIM54-204ENST00000488321 hCG_1984214I3L0E3 225 aa17.2■□□□□ 0.34
TRIM54-204ENST00000488321 STXBP3O00186 592 aa17.2■□□□□ 0.34
TRIM54-204ENST00000488321 KPNA6O60684 536 aa17.2■□□□□ 0.34
TRIM54-204ENST00000488321 RAG1P15918 1043 aa17.2■□□□□ 0.34
TRIM54-204ENST00000488321 BMP8BP34820 402 aa17.2■□□□□ 0.34
TRIM54-204ENST00000488321 ADCY7P51828 1080 aa17.2■□□□□ 0.34
TRIM54-204ENST00000488321 MRPS9P82933 396 aaKnown RBP17.2■□□□□ 0.34
TRIM54-204ENST00000488321 TYW1BQ6NUM6 668 aa17.2■□□□□ 0.34
TRIM54-204ENST00000488321 ZNF713Q8N859 430 aaPredicted RBP17.2■□□□□ 0.34
TRIM54-204ENST00000488321 BADQ92934 168 aa17.2■□□□□ 0.34
TRIM54-204ENST00000488321 PHKBQ93100 1093 aa17.2■□□□□ 0.34
TRIM54-204ENST00000488321 BARHL2Q9NY43 387 aa17.2■□□□□ 0.34
TRIM54-204ENST00000488321 MCM3APO60318 1980 aa17.2■□□□□ 0.34
TRIM54-204ENST00000488321 CEP290O15078 2479 aa17.2■□□□□ 0.34
TRIM54-204ENST00000488321 NID2Q14112 1375 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 SMCO2A6NFE2 343 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 STAM2O75886 525 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 GGPS1O95749 300 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 MMP3P08254 477 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 SCG2P13521 617 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 EVCP57679 992 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 ANAPC15P60006 121 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 STK3Q13188 491 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 LAMC2Q13753 1193 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 PFKFB3Q16875 520 aaPredicted RBP17.19■□□□□ 0.34
TRIM54-204ENST00000488321 FAM47CQ5HY64 1035 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 PCNX4Q63HM2 1172 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 FAM126BQ8IXS8 530 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 SLC26A6Q9BXS9 759 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 EHMT1Q9H9B1 1298 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 RIC8AQ9NPQ8 531 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 PCDHA6Q9UN73 950 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 PCDHA8Q9Y5H6 950 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 ALPK3Q96L96 1907 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 GRIN2DO15399 1336 aa17.19■□□□□ 0.34
TRIM54-204ENST00000488321 A0A1W2PPC1 479 aa17.18■□□□□ 0.34
TRIM54-204ENST00000488321 CPLX1O14810 134 aa17.18■□□□□ 0.34
TRIM54-204ENST00000488321 KIAA0355O15063 1070 aa17.18■□□□□ 0.34
TRIM54-204ENST00000488321 SEC24BO95487 1268 aa17.18■□□□□ 0.34
TRIM54-204ENST00000488321 TGFB3P10600 412 aa17.18■□□□□ 0.34
TRIM54-204ENST00000488321 UBA1P22314 1058 aaKnown RBP17.18■□□□□ 0.34
TRIM54-204ENST00000488321 XRRA1Q6P2D8 792 aa17.18■□□□□ 0.34
TRIM54-204ENST00000488321 NLRX1Q86UT6 975 aa17.18■□□□□ 0.34
TRIM54-204ENST00000488321 SLC43A3Q8NBI5 491 aa17.18■□□□□ 0.34
TRIM54-204ENST00000488321 PPP1R13LQ8WUF5 828 aa17.18■□□□□ 0.34
TRIM54-204ENST00000488321 SPATA33Q96N06 139 aa17.18■□□□□ 0.34
TRIM54-204ENST00000488321 INPP4AQ96PE3 977 aaPredicted RBP17.18■□□□□ 0.34
TRIM54-204ENST00000488321 SEZ6LQ9BYH1 1024 aa17.18■□□□□ 0.34
TRIM54-204ENST00000488321 MLXIPQ9HAP2 919 aa17.18■□□□□ 0.34
TRIM54-204ENST00000488321 PRPF3O43395 683 aaKnown RBP17.17■□□□□ 0.34
TRIM54-204ENST00000488321 FIBPO43427 364 aa17.17■□□□□ 0.34
TRIM54-204ENST00000488321 ITGB8P26012 769 aa17.17■□□□□ 0.34
TRIM54-204ENST00000488321 SP2Q02086 613 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms