RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 MYCLP12524 364 aaPredicted RBP16.76■□□□□ 0.27
LIMS3-205ENST00000487150 CPT1AP50416 773 aa16.76■□□□□ 0.27
LIMS3-205ENST00000487150 GJA9P57773 515 aa16.76■□□□□ 0.27
LIMS3-205ENST00000487150 NLRP5P59047 1200 aa16.76■□□□□ 0.27
LIMS3-205ENST00000487150 NKX3-2P78367 333 aa16.76■□□□□ 0.27
LIMS3-205ENST00000487150 HMGN5P82970 282 aaKnown RBP16.76■□□□□ 0.27
LIMS3-205ENST00000487150 LRRC41Q15345 812 aa16.76■□□□□ 0.27
LIMS3-205ENST00000487150 NLRX1Q86UT6 975 aa16.76■□□□□ 0.27
LIMS3-205ENST00000487150 ORC3Q9UBD5 711 aaPredicted RBP16.76■□□□□ 0.27
LIMS3-205ENST00000487150 GNEQ9Y223 722 aaKnown RBP16.76■□□□□ 0.27
LIMS3-205ENST00000487150 MRVI1Q9Y6F6 885 aa16.76■□□□□ 0.27
LIMS3-205ENST00000487150 FIBPO43427 364 aa16.75■□□□□ 0.27
LIMS3-205ENST00000487150 ADAMTS4O75173 837 aa16.75■□□□□ 0.27
LIMS3-205ENST00000487150 MYCNP04198 464 aaPredicted RBP16.75■□□□□ 0.27
LIMS3-205ENST00000487150 C6orf222P0C671 652 aaPredicted RBP16.75■□□□□ 0.27
LIMS3-205ENST00000487150 TXNP10599 105 aaKnown RBP16.75■□□□□ 0.27
LIMS3-205ENST00000487150 TRIM29Q14134 588 aa16.75■□□□□ 0.27
LIMS3-205ENST00000487150 UBE2SQ16763 222 aa16.75■□□□□ 0.27
LIMS3-205ENST00000487150 ANO1Q5XXA6 986 aa16.75■□□□□ 0.27
LIMS3-205ENST00000487150 TYW1BQ6NUM6 668 aa16.75■□□□□ 0.27
LIMS3-205ENST00000487150 INPP4AQ96PE3 977 aaPredicted RBP16.75■□□□□ 0.27
LIMS3-205ENST00000487150 BRMS1Q9HCU9 246 aa16.75■□□□□ 0.27
LIMS3-205ENST00000487150 VPS54Q9P1Q0 977 aa16.75■□□□□ 0.27
LIMS3-205ENST00000487150 PCDHA6Q9UN73 950 aa16.75■□□□□ 0.27
LIMS3-205ENST00000487150 PCDHA8Q9Y5H6 950 aa16.75■□□□□ 0.27
LIMS3-205ENST00000487150 MYH6P13533 1939 aa16.74■□□□□ 0.27
LIMS3-205ENST00000487150 CABYRO75952 493 aa16.74■□□□□ 0.27
LIMS3-205ENST00000487150 PGK1P00558 417 aa16.74■□□□□ 0.27
LIMS3-205ENST00000487150 GH1P01241 217 aa16.74■□□□□ 0.27
LIMS3-205ENST00000487150 SMPD1P17405 629 aa16.74■□□□□ 0.27
LIMS3-205ENST00000487150 SREBF1P36956 1147 aa16.74■□□□□ 0.27
LIMS3-205ENST00000487150 CLK2P49760 499 aaKnown RBP16.74■□□□□ 0.27
LIMS3-205ENST00000487150 SEPT14Q6ZU15 432 aa16.74■□□□□ 0.27
LIMS3-205ENST00000487150 NECAB1Q8N987 351 aa16.74■□□□□ 0.27
LIMS3-205ENST00000487150 DAGLBQ8NCG7 672 aa16.74■□□□□ 0.27
LIMS3-205ENST00000487150 GIMAP8Q8ND71 665 aaPredicted RBP16.74■□□□□ 0.27
LIMS3-205ENST00000487150 PAWRQ96IZ0 340 aaKnown RBP16.74■□□□□ 0.27
LIMS3-205ENST00000487150 ANO3Q9BYT9 981 aa16.74■□□□□ 0.27
LIMS3-205ENST00000487150 ZNFX1Q9P2E3 1918 aaKnown RBP16.74■□□□□ 0.27
LIMS3-205ENST00000487150 LRRC37A2A6NM11 1700 aa16.73■□□□□ 0.27
LIMS3-205ENST00000487150 BAZ2BQ9UIF8 2168 aaKnown RBP16.73■□□□□ 0.27
LIMS3-205ENST00000487150 MAFGO15525 162 aa16.73■□□□□ 0.27
LIMS3-205ENST00000487150 KPNA6O60684 536 aa16.73■□□□□ 0.27
LIMS3-205ENST00000487150 LARGE1O95461 756 aa16.73■□□□□ 0.27
LIMS3-205ENST00000487150 COL6A1P12109 1028 aa16.73■□□□□ 0.27
LIMS3-205ENST00000487150 FSCN1Q16658 493 aaKnown RBP16.73■□□□□ 0.27
LIMS3-205ENST00000487150 GNASQ5JWF2 1037 aa16.73■□□□□ 0.27
LIMS3-205ENST00000487150 GJC2Q5T442 439 aaPredicted RBP16.73■□□□□ 0.27
LIMS3-205ENST00000487150 NSUN7Q8NE18 718 aaKnown RBP16.73■□□□□ 0.27
LIMS3-205ENST00000487150 OR6J1Q8NGC5 347 aa16.73■□□□□ 0.27
LIMS3-205ENST00000487150 GPRASP2Q96D09 838 aa16.73■□□□□ 0.27
LIMS3-205ENST00000487150 SEZ6LQ9BYH1 1024 aa16.73■□□□□ 0.27
LIMS3-205ENST00000487150 PDGFCQ9NRA1 345 aa16.73■□□□□ 0.27
LIMS3-205ENST00000487150 PCDHA4Q9UN74 947 aa16.73■□□□□ 0.27
LIMS3-205ENST00000487150 PHF24Q9UPV7 400 aa16.73■□□□□ 0.27
LIMS3-205ENST00000487150 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.72■□□□□ 0.27
LIMS3-205ENST00000487150 DYNC1LI2O43237 492 aaPredicted RBP16.72■□□□□ 0.27
LIMS3-205ENST00000487150 ICAM3P32942 547 aa16.72■□□□□ 0.27
LIMS3-205ENST00000487150 LAMC2Q13753 1193 aa16.72■□□□□ 0.27
LIMS3-205ENST00000487150 NEDD9Q14511 834 aa16.72■□□□□ 0.27
LIMS3-205ENST00000487150 CCDC62Q6P9F0 684 aa16.72■□□□□ 0.27
LIMS3-205ENST00000487150 CCDC83Q8IWF9 413 aa16.72■□□□□ 0.27
LIMS3-205ENST00000487150 KLHDC9Q8NEP7 349 aa16.72■□□□□ 0.27
LIMS3-205ENST00000487150 IL31RAQ8NI17 732 aa16.72■□□□□ 0.27
LIMS3-205ENST00000487150 EMID1Q96A84 441 aaPredicted RBP16.72■□□□□ 0.27
LIMS3-205ENST00000487150 LENG1Q96BZ8 264 aaPredicted RBP16.72■□□□□ 0.27
LIMS3-205ENST00000487150 GLT1D1Q96MS3 346 aa16.72■□□□□ 0.27
LIMS3-205ENST00000487150 ALG1Q9BT22 464 aa16.72■□□□□ 0.27
LIMS3-205ENST00000487150 POLR3EQ9NVU0 708 aa16.72■□□□□ 0.27
LIMS3-205ENST00000487150 LCTP09848 1927 aa16.71■□□□□ 0.27
LIMS3-205ENST00000487150 ADCY6O43306 1168 aa16.71■□□□□ 0.27
LIMS3-205ENST00000487150 PPFIA3O75145 1194 aa16.71■□□□□ 0.27
LIMS3-205ENST00000487150 CTDNEP1O95476 244 aa16.71■□□□□ 0.27
LIMS3-205ENST00000487150 ARHGAP4P98171 946 aa16.71■□□□□ 0.27
LIMS3-205ENST00000487150 SETQ01105 290 aaPredicted RBP16.71■□□□□ 0.27
LIMS3-205ENST00000487150 MTMR1Q13613 665 aa16.71■□□□□ 0.27
LIMS3-205ENST00000487150 NIPA1Q7RTP0 329 aa16.71■□□□□ 0.27
LIMS3-205ENST00000487150 BLIDQ8IZY5 108 aa16.71■□□□□ 0.27
LIMS3-205ENST00000487150 FAM184AQ8NB25 1140 aa16.71■□□□□ 0.27
LIMS3-205ENST00000487150 DIS3LQ8TF46 1054 aaKnown RBP16.71■□□□□ 0.27
LIMS3-205ENST00000487150 SENP7Q9BQF6 1050 aa16.71■□□□□ 0.27
LIMS3-205ENST00000487150 DDX49Q9Y6V7 483 aaKnown RBP16.71■□□□□ 0.27
LIMS3-205ENST00000487150 ELP1O95163 1332 aa16.7■□□□□ 0.26
LIMS3-205ENST00000487150 ZNF76P36508 570 aa16.7■□□□□ 0.26
LIMS3-205ENST00000487150 MNX1P50219 401 aaPredicted RBP16.7■□□□□ 0.26
LIMS3-205ENST00000487150 ACLYP53396 1101 aa16.7■□□□□ 0.26
LIMS3-205ENST00000487150 MRPS9P82933 396 aaKnown RBP16.7■□□□□ 0.26
LIMS3-205ENST00000487150 KRT25Q7Z3Z0 450 aa16.7■□□□□ 0.26
LIMS3-205ENST00000487150 DHX37Q8IY37 1157 aaKnown RBP16.7■□□□□ 0.26
LIMS3-205ENST00000487150 PPTC7Q8NI37 304 aa16.7■□□□□ 0.26
LIMS3-205ENST00000487150 PHF20Q9BVI0 1012 aa16.7■□□□□ 0.26
LIMS3-205ENST00000487150 SENP6Q9GZR1 1112 aaPredicted RBP16.7■□□□□ 0.26
LIMS3-205ENST00000487150 STARD7Q9NQZ5 370 aa16.7■□□□□ 0.26
LIMS3-205ENST00000487150 DDX41Q9UJV9 622 aaKnown RBP16.7■□□□□ 0.26
LIMS3-205ENST00000487150 NR2E3Q9Y5X4 410 aa16.7■□□□□ 0.26
LIMS3-205ENST00000487150 MROH7Q68CQ1 1323 aa16.7■□□□□ 0.26
LIMS3-205ENST00000487150 SMCHD1A6NHR9 2005 aa16.69■□□□□ 0.26
LIMS3-205ENST00000487150 SPATA31C2B4DYI2 1134 aa16.69■□□□□ 0.26
LIMS3-205ENST00000487150 UBA1P22314 1058 aaKnown RBP16.69■□□□□ 0.26
LIMS3-205ENST00000487150 SAFBQ15424 915 aaKnown RBP eCLIP16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms