RNA–Protein interactions for RNA: ENST00000486032.1

COPS3-208, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 725 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-208ENST00000486032 CPA4Q9UI42 421 aa6.53□□□□□ -1.36
COPS3-208ENST00000486032 MAD2L2Q9UI95 211 aa6.53□□□□□ -1.36
COPS3-208ENST00000486032 FEM1BQ9UK73 627 aa6.53□□□□□ -1.36
COPS3-208ENST00000486032 PRR12Q9ULL5 1215 aa6.53□□□□□ -1.36
COPS3-208ENST00000486032 ADGRA2Q96PE1 1338 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 TESPA1A2RU30 521 aaPredicted RBP6.52□□□□□ -1.37
COPS3-208ENST00000486032 PALM3A6NDB9 673 aaPredicted RBP6.52□□□□□ -1.37
COPS3-208ENST00000486032 ZBED4O75132 1171 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 BCRP11274 1271 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 CTCFP49711 727 aaPredicted RBP6.52□□□□□ -1.37
COPS3-208ENST00000486032 GNAQP50148 359 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 HERVK_113P62684 666 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 AKAP17AQ02040 695 aaKnown RBP6.52□□□□□ -1.37
COPS3-208ENST00000486032 GUCA2AQ02747 115 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 USH1GQ495M9 461 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 CPLX2Q6PUV4 134 aaKnown RBP6.52□□□□□ -1.37
COPS3-208ENST00000486032 TMTC3Q6ZXV5 915 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 NBPF11Q86T75 865 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 ADGRF4Q8IZF3 695 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 SRBD1Q8N5C6 995 aaKnown RBP6.52□□□□□ -1.37
COPS3-208ENST00000486032 ANKRD13CQ8N6S4 541 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 PHKBQ93100 1093 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 DDX11Q96FC9 970 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 ZNF274Q96GC6 653 aaPredicted RBP6.52□□□□□ -1.37
COPS3-208ENST00000486032 ZSCAN31Q96LW9 406 aaPredicted RBP6.52□□□□□ -1.37
COPS3-208ENST00000486032 PIGSQ96S52 555 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 PARK7Q99497 189 aaKnown RBP6.52□□□□□ -1.37
COPS3-208ENST00000486032 KRTAP4-7Q9BYR0 210 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 AGXT2Q9BYV1 514 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 ALDH8A1Q9H2A2 487 aaPredicted RBP6.52□□□□□ -1.37
COPS3-208ENST00000486032 RAVER2Q9HCJ3 691 aaKnown RBP6.52□□□□□ -1.37
COPS3-208ENST00000486032 RBM28Q9NW13 759 aaKnown RBP6.52□□□□□ -1.37
COPS3-208ENST00000486032 PPP1R9AQ9ULJ8 1098 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 SYNPO2Q9UMS6 1093 aa6.52□□□□□ -1.37
COPS3-208ENST00000486032 CCDC196A0A1B0GTZ2 297 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 CYTH3O43739 400 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 JAK2O60674 1132 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 PFKFB2O60825 505 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 HSP90AA1P07900 732 aaKnown RBP6.51□□□□□ -1.37
COPS3-208ENST00000486032 SNHG28P0DPA3 235 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 HOXA7P31268 230 aaPredicted RBP6.51□□□□□ -1.37
COPS3-208ENST00000486032 GRM5P41594 1212 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 MCM2P49736 904 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 MAP2K1Q02750 393 aaPredicted RBP6.51□□□□□ -1.37
COPS3-208ENST00000486032 SSRP1Q08945 709 aaKnown RBP6.51□□□□□ -1.37
COPS3-208ENST00000486032 CDC37Q16543 378 aaPredicted RBP6.51□□□□□ -1.37
COPS3-208ENST00000486032 QRICH1Q2TAL8 776 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 ALYREFQ86V81 257 aaKnown RBP6.51□□□□□ -1.37
COPS3-208ENST00000486032 CCAR1Q8IX12 1150 aaKnown RBP6.51□□□□□ -1.37
COPS3-208ENST00000486032 FBXL16Q8N461 479 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 PRPF38AQ8NAV1 312 aaKnown RBP6.51□□□□□ -1.37
COPS3-208ENST00000486032 ZNF296Q8WUU4 475 aaPredicted RBP6.51□□□□□ -1.37
COPS3-208ENST00000486032 GTF3C6Q969F1 213 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 RRP36Q96EU6 259 aaKnown RBP6.51□□□□□ -1.37
COPS3-208ENST00000486032 TMX3Q96JJ7 454 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 AGBL1Q96MI9 1066 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 JMJD4Q9H9V9 463 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 TSHZ2Q9NRE2 1034 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 HOMER2Q9NSB8 354 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 FAM217BQ9NTX9 383 aaPredicted RBP6.51□□□□□ -1.37
COPS3-208ENST00000486032 HOXC10Q9NYD6 342 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 BTBD7Q9P203 1132 aa6.51□□□□□ -1.37
COPS3-208ENST00000486032 SEC63Q9UGP8 760 aaKnown RBP6.51□□□□□ -1.37
COPS3-208ENST00000486032 BAZ2BQ9UIF8 2168 aaKnown RBP6.51□□□□□ -1.37
COPS3-208ENST00000486032 PTPDC1A2A3K4 754 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 GPR25O00155 361 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 VWA5AO00534 786 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 CA12O43570 354 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 CDKL5O76039 1030 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 ALAS1P13196 640 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 ANP32AP39687 249 aaKnown RBP6.5□□□□□ -1.37
COPS3-208ENST00000486032 EVCP57679 992 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 ST3GAL1Q11201 340 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 TMEM132BQ14DG7 1078 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 SLC35G1Q2M3R5 365 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 SNRNP48Q6IEG0 339 aaKnown RBP6.5□□□□□ -1.37
COPS3-208ENST00000486032 BTNL9Q6UXG8 535 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 HEATR3Q7Z4Q2 680 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 NCAPG2Q86XI2 1143 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 FBXO11Q86XK2 927 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 TRIM22Q8IYM9 498 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 FAM184AQ8NB25 1140 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 GPRC5AQ8NFJ5 357 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 CD99L2Q8TCZ2 262 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 GPKOWQ92917 476 aaPredicted RBP eCLIP6.5□□□□□ -1.37
COPS3-208ENST00000486032 COA7Q96BR5 231 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 MAP3K14Q99558 947 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 LZTS2Q9BRK4 669 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 EFCC1Q9HA90 598 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 TXNRD2Q9NNW7 524 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 SH2B1Q9NRF2 756 aaPredicted RBP6.5□□□□□ -1.37
COPS3-208ENST00000486032 ORC3Q9UBD5 711 aaPredicted RBP6.5□□□□□ -1.37
COPS3-208ENST00000486032 RBPJLQ9UBG7 517 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 CCPG1Q9ULG6 757 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 SLC45A1Q9Y2W3 748 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 BRCA2P51587 3418 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 RLFQ13129 1914 aa6.5□□□□□ -1.37
COPS3-208ENST00000486032 PLXNB2O15031 1838 aa6.49□□□□□ -1.37
COPS3-208ENST00000486032 COL11A1P12107 1806 aaPredicted RBP6.49□□□□□ -1.37
COPS3-208ENST00000486032 TLR2O60603 784 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms