RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 DEFB123Q8N688 67 aa19.6■□□□□ 0.73
VIM-205ENST00000485947 SYTL5Q8TDW5 730 aaPredicted RBP19.6■□□□□ 0.73
VIM-205ENST00000485947 PURBQ96QR8 312 aaKnown RBP19.6■□□□□ 0.73
VIM-205ENST00000485947 PRDM5Q9NQX1 630 aaPredicted RBP19.6■□□□□ 0.73
VIM-205ENST00000485947 PDGFCQ9NRA1 345 aa19.6■□□□□ 0.73
VIM-205ENST00000485947 CIZ1Q9ULV3 898 aaPredicted RBP19.6■□□□□ 0.73
VIM-205ENST00000485947 PNMA6FA0A0J9YX94 578 aa19.59■□□□□ 0.73
VIM-205ENST00000485947 KPNA6O60684 536 aa19.59■□□□□ 0.73
VIM-205ENST00000485947 CPT1AP50416 773 aa19.59■□□□□ 0.73
VIM-205ENST00000485947 METAP2P50579 478 aaKnown RBP eCLIP19.59■□□□□ 0.738e-13■■■□□ 16.9
VIM-205ENST00000485947 HSD17B4P51659 736 aa19.59■□□□□ 0.73
VIM-205ENST00000485947 NECAB1Q8N987 351 aa19.59■□□□□ 0.73
VIM-205ENST00000485947 SLC43A3Q8NBI5 491 aa19.59■□□□□ 0.73
VIM-205ENST00000485947 CTCFLQ8NI51 663 aaPredicted RBP19.59■□□□□ 0.73
VIM-205ENST00000485947 VTI1AQ96AJ9 217 aa19.59■□□□□ 0.73
VIM-205ENST00000485947 SENP2Q9HC62 589 aa19.59■□□□□ 0.73
VIM-205ENST00000485947 TMEM39AQ9NV64 488 aa19.59■□□□□ 0.73
VIM-205ENST00000485947 POLR3EQ9NVU0 708 aa19.59■□□□□ 0.73
VIM-205ENST00000485947 SMC3Q9UQE7 1217 aa19.59■□□□□ 0.73
VIM-205ENST00000485947 PCDHA1Q9Y5I3 950 aa19.59■□□□□ 0.73
VIM-205ENST00000485947 TRIM43BA6NCK2 446 aa19.58■□□□□ 0.72
VIM-205ENST00000485947 GOLGA8AA7E2F4 631 aa19.58■□□□□ 0.72
VIM-205ENST00000485947 TLR3O15455 904 aaKnown RBP19.58■□□□□ 0.72
VIM-205ENST00000485947 PQBP1O60828 265 aaKnown RBP19.58■□□□□ 0.72
VIM-205ENST00000485947 DDIT3P35638 169 aa19.58■□□□□ 0.72
VIM-205ENST00000485947 FAAP100Q0VG06 881 aa19.58■□□□□ 0.72
VIM-205ENST00000485947 TTLL4Q14679 1199 aa19.58■□□□□ 0.72
VIM-205ENST00000485947 STXBP2Q15833 593 aa19.58■□□□□ 0.72
VIM-205ENST00000485947 Q7L0L9 218 aa19.58■□□□□ 0.72
VIM-205ENST00000485947 PIAS4Q8N2W9 510 aaPredicted RBP19.58■□□□□ 0.72
VIM-205ENST00000485947 TRIM43Q96BQ3 446 aaPredicted RBP19.58■□□□□ 0.72
VIM-205ENST00000485947 RMDN3Q96TC7 470 aa19.58■□□□□ 0.72
VIM-205ENST00000485947 SPZ1Q9BXG8 430 aa19.58■□□□□ 0.72
VIM-205ENST00000485947 FOXD4L1Q9NU39 408 aa19.58■□□□□ 0.72
VIM-205ENST00000485947 CCDC196A0A1B0GTZ2 297 aa19.57■□□□□ 0.72
VIM-205ENST00000485947 RAG1P15918 1043 aa19.57■□□□□ 0.72
VIM-205ENST00000485947 CCT2P78371 535 aaKnown RBP19.57■□□□□ 0.72
VIM-205ENST00000485947 CPLX2Q6PUV4 134 aaKnown RBP19.57■□□□□ 0.72
VIM-205ENST00000485947 MICU3Q86XE3 530 aa19.57■□□□□ 0.72
VIM-205ENST00000485947 MTMR10Q9NXD2 777 aa19.57■□□□□ 0.72
VIM-205ENST00000485947 LCTP09848 1927 aa19.57■□□□□ 0.72
VIM-205ENST00000485947 LRRC37A2A6NM11 1700 aa19.56■□□□□ 0.72
VIM-205ENST00000485947 EIF3JO75822 258 aaKnown RBP19.56■□□□□ 0.72
VIM-205ENST00000485947 CDKL5O76039 1030 aa19.56■□□□□ 0.72
VIM-205ENST00000485947 HMGN5P82970 282 aaKnown RBP19.56■□□□□ 0.72
VIM-205ENST00000485947 BEX3Q00994 111 aa19.56■□□□□ 0.72
VIM-205ENST00000485947 ARHGEF16Q5VV41 709 aa19.56■□□□□ 0.72
VIM-205ENST00000485947 BADQ92934 168 aa19.56■□□□□ 0.72
VIM-205ENST00000485947 TAAR1Q96RJ0 339 aa19.56■□□□□ 0.72
VIM-205ENST00000485947 RBM28Q9NW13 759 aaKnown RBP19.56■□□□□ 0.72
VIM-205ENST00000485947 CHMP5Q9NZZ3 219 aa19.56■□□□□ 0.72
VIM-205ENST00000485947 TBX21Q9UL17 535 aa19.56■□□□□ 0.72
VIM-205ENST00000485947 A6NJR5 290 aa19.55■□□□□ 0.72
VIM-205ENST00000485947 CPLX1O14810 134 aa19.55■□□□□ 0.72
VIM-205ENST00000485947 CYTH3O43739 400 aa19.55■□□□□ 0.72
VIM-205ENST00000485947 CFBP00751 764 aa19.55■□□□□ 0.72
VIM-205ENST00000485947 TIMP1P01033 207 aa19.55■□□□□ 0.72
VIM-205ENST00000485947 PDIA4P13667 645 aaKnown RBP19.55■□□□□ 0.72
VIM-205ENST00000485947 RTN1Q16799 776 aa19.55■□□□□ 0.72
VIM-205ENST00000485947 KCNV1Q6PIU1 500 aa19.55■□□□□ 0.72
VIM-205ENST00000485947 CXCL17Q6UXB2 119 aa19.55■□□□□ 0.72
VIM-205ENST00000485947 SH3RF1Q7Z6J0 888 aa19.55■□□□□ 0.72
VIM-205ENST00000485947 FAM126BQ8IXS8 530 aa19.55■□□□□ 0.72
VIM-205ENST00000485947 SMARCC2Q8TAQ2 1214 aa19.55■□□□□ 0.72
VIM-205ENST00000485947 TBC1D5Q92609 795 aa19.55■□□□□ 0.72
VIM-205ENST00000485947 PIGSQ96S52 555 aa19.55■□□□□ 0.72
VIM-205ENST00000485947 KIF3AQ9Y496 699 aa19.55■□□□□ 0.72
VIM-205ENST00000485947 GCOM1H8Y6P7 765 aaPredicted RBP19.54■□□□□ 0.72
VIM-205ENST00000485947 OPLAHO14841 1288 aa19.54■□□□□ 0.72
VIM-205ENST00000485947 PPP1R11O60927 126 aaPredicted RBP19.54■□□□□ 0.72
VIM-205ENST00000485947 POLR2MP0CAP2 368 aa19.54■□□□□ 0.72
VIM-205ENST00000485947 TXNP10599 105 aaKnown RBP19.54■□□□□ 0.72
VIM-205ENST00000485947 GJB2P29033 226 aa19.54■□□□□ 0.72
VIM-205ENST00000485947 IRX5P78411 483 aaPredicted RBP19.54■□□□□ 0.72
VIM-205ENST00000485947 ITGA7Q13683 1181 aa19.54■□□□□ 0.72
VIM-205ENST00000485947 CCDC62Q6P9F0 684 aa19.54■□□□□ 0.72
VIM-205ENST00000485947 TEX2Q8IWB9 1127 aa19.54■□□□□ 0.72
VIM-205ENST00000485947 FANCBQ8NB91 859 aa19.54■□□□□ 0.72
VIM-205ENST00000485947 NSUN7Q8NE18 718 aaKnown RBP19.54■□□□□ 0.72
VIM-205ENST00000485947 OR6J1Q8NGC5 347 aa19.54■□□□□ 0.72
VIM-205ENST00000485947 RRP36Q96EU6 259 aaKnown RBP19.54■□□□□ 0.72
VIM-205ENST00000485947 MYL10Q9BUA6 226 aa19.54■□□□□ 0.72
VIM-205ENST00000485947 NCOA5Q9HCD5 579 aaKnown RBP19.54■□□□□ 0.72
VIM-205ENST00000485947 PXMP2Q9NR77 195 aa19.54■□□□□ 0.72
VIM-205ENST00000485947 COL20A1Q9P218 1284 aa19.54■□□□□ 0.72
VIM-205ENST00000485947 DDX49Q9Y6V7 483 aaKnown RBP19.54■□□□□ 0.72
VIM-205ENST00000485947 CD4P01730 458 aa19.53■□□□□ 0.72
VIM-205ENST00000485947 NR3C2P08235 984 aa19.53■□□□□ 0.72
VIM-205ENST00000485947 SLC35G1Q2M3R5 365 aa19.53■□□□□ 0.72
VIM-205ENST00000485947 HOMER1Q86YM7 354 aa19.53■□□□□ 0.72
VIM-205ENST00000485947 MTG1Q9BT17 334 aaPredicted RBP19.53■□□□□ 0.72
VIM-205ENST00000485947 SPTBN5Q9NRC6 3674 aaKnown RBP19.52■□□□□ 0.72
VIM-205ENST00000485947 STAM2O75886 525 aa19.52■□□□□ 0.72
VIM-205ENST00000485947 CTDNEP1O95476 244 aa19.52■□□□□ 0.72
VIM-205ENST00000485947 GH1P01241 217 aa19.52■□□□□ 0.72
VIM-205ENST00000485947 SUPT20HL2P0C7V6 817 aa19.52■□□□□ 0.72
VIM-205ENST00000485947 TGFB3P10600 412 aa19.52■□□□□ 0.72
VIM-205ENST00000485947 RXRAP19793 462 aa19.52■□□□□ 0.72
VIM-205ENST00000485947 PDCP20941 246 aa19.52■□□□□ 0.72
VIM-205ENST00000485947 CDC27P30260 824 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms