RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 ESR2Q92731 530 aa16.21■□□□□ 0.19
SQSTM1-208ENST00000485412 ZBED2Q9BTP6 218 aa16.21■□□□□ 0.19
SQSTM1-208ENST00000485412 PNMA2Q9UL42 364 aa16.21■□□□□ 0.19
SQSTM1-208ENST00000485412 ARIH1Q9Y4X5 557 aaPredicted RBP16.21■□□□□ 0.19
SQSTM1-208ENST00000485412 DOCK5Q9H7D0 1870 aa16.2■□□□□ 0.18
SQSTM1-208ENST00000485412 PTGISQ16647 500 aa16.2■□□□□ 0.18
SQSTM1-208ENST00000485412 LY6KQ17RY6 165 aa16.2■□□□□ 0.18
SQSTM1-208ENST00000485412 ENAHQ8N8S7 591 aaPredicted RBP16.2■□□□□ 0.18
SQSTM1-208ENST00000485412 SYTL5Q8TDW5 730 aaPredicted RBP16.2■□□□□ 0.18
SQSTM1-208ENST00000485412 AFG1LQ8WV93 481 aa16.2■□□□□ 0.18
SQSTM1-208ENST00000485412 ZNF213O14771 459 aa16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 PCP11498 1178 aaKnown RBP16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 WDR5P61964 334 aaKnown RBP16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 ARHGAP1Q07960 439 aa16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 GPNMBQ14956 572 aa16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 QRICH1Q2TAL8 776 aa16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 GPATCH4Q5T3I0 446 aaKnown RBP16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 SEPT14Q6ZU15 432 aa16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 TMCO2Q7Z6W1 182 aaPredicted RBP16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 CHD1LQ86WJ1 897 aa16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 DGKHQ86XP1 1220 aa16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 CAGE1Q8TC20 777 aa16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 AFAP1L1Q8TED9 768 aa16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 GDPD5Q8WTR4 605 aa16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 KAT2BQ92831 832 aa16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 RNF41Q9H4P4 317 aaPredicted RBP16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 BRWD1Q9NSI6 2320 aa16.19■□□□□ 0.18
SQSTM1-208ENST00000485412 SIP14410 1827 aa16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 LCHNA4D1U4 455 aa16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 OPLAHO14841 1288 aa16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 LPXNO60711 386 aa16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 MMP3P08254 477 aa16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 NUCB1Q02818 461 aa16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 TCTN1Q2MV58 587 aa16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 GDF6Q6KF10 455 aaPredicted RBP16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 CHST3Q7LGC8 479 aa16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 TICAM2Q86XR7 235 aa16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 STAG2Q8N3U4 1231 aa16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 DHX38Q92620 1227 aaKnown RBP16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 ZSCAN10Q96SZ4 725 aaPredicted RBP16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 JMJD4Q9H9V9 463 aa16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 VAT1LQ9HCJ6 419 aa16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 ZSWIM5Q9P217 1185 aa16.18■□□□□ 0.18
SQSTM1-208ENST00000485412 FAM86C2PA6NEL3 165 aa16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 GPR37L1O60883 481 aa16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 PPP1R11O60927 126 aaPredicted RBP16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 SELPP16109 830 aa16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 EIF2AK2P19525 551 aaKnown RBP16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 SLC35G1Q2M3R5 365 aa16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 CNKSR3Q6P9H4 555 aa16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 LRRC8DQ7L1W4 858 aa16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 RGS22Q8NE09 1264 aa16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 EXOC6Q8TAG9 804 aa16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 ANKS1AQ92625 1134 aa16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 OSBPL3Q9H4L5 887 aa16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 KAT14Q9H8E8 782 aa16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 LMCD1Q9NZU5 365 aa16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 MTUS1Q9ULD2 1270 aa16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 ABCB11O95342 1321 aa16.17■□□□□ 0.18
SQSTM1-208ENST00000485412 SORBS3O60504 671 aa16.16■□□□□ 0.18
SQSTM1-208ENST00000485412 DEFB103AP81534 67 aa16.16■□□□□ 0.18
SQSTM1-208ENST00000485412 IQCA1Q86XH1 822 aa16.16■□□□□ 0.18
SQSTM1-208ENST00000485412 KHSRPQ92945 711 aaKnown RBP eCLIP16.16■□□□□ 0.18
SQSTM1-208ENST00000485412 WNT8BQ93098 351 aa16.16■□□□□ 0.18
SQSTM1-208ENST00000485412 RMDN3Q96TC7 470 aa16.16■□□□□ 0.18
SQSTM1-208ENST00000485412 DIAPH3Q9NSV4 1193 aa16.16■□□□□ 0.18
SQSTM1-208ENST00000485412 PARNO95453 639 aaKnown RBP16.15■□□□□ 0.18
SQSTM1-208ENST00000485412 GH1P01241 217 aa16.15■□□□□ 0.18
SQSTM1-208ENST00000485412 ZNF286BP0CG31 522 aa16.15■□□□□ 0.18
SQSTM1-208ENST00000485412 MFAP1P55081 439 aaKnown RBP16.15■□□□□ 0.18
SQSTM1-208ENST00000485412 HIC1Q14526 733 aa16.15■□□□□ 0.18
SQSTM1-208ENST00000485412 ASPRV1Q53RT3 343 aa16.15■□□□□ 0.18
SQSTM1-208ENST00000485412 CYB5R4Q7L1T6 521 aa16.15■□□□□ 0.18
SQSTM1-208ENST00000485412 NSUN6Q8TEA1 469 aaKnown RBP16.15■□□□□ 0.18
SQSTM1-208ENST00000485412 ZFP91Q96JP5 570 aaPredicted RBP16.15■□□□□ 0.18
SQSTM1-208ENST00000485412 YTHDC1Q96MU7 727 aaKnown RBP16.15■□□□□ 0.18
SQSTM1-208ENST00000485412 TGS1Q96RS0 853 aaKnown RBP16.15■□□□□ 0.18
SQSTM1-208ENST00000485412 RAD9AQ99638 391 aa16.15■□□□□ 0.18
SQSTM1-208ENST00000485412 DSCC1Q9BVC3 393 aa16.15■□□□□ 0.18
SQSTM1-208ENST00000485412 DHX16O60231 1041 aaKnown RBP16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 RGS20O76081 388 aa16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 CFBP00751 764 aa16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 PARP1P09874 1014 aaKnown RBP16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 CASTP20810 708 aaKnown RBP16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 ZNF200P98182 395 aaPredicted RBP16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 SESTD1Q86VW0 696 aa16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 FBXO11Q86XK2 927 aa16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 IL31RAQ8NI17 732 aa16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 RWDD1Q9H446 243 aaPredicted RBP16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 UBE2ZQ9H832 354 aaPredicted RBP16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 SUGCTQ9HAC7 445 aa16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 SENP2Q9HC62 589 aa16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 C11orf16Q9NQ32 467 aa16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 PXMP2Q9NR77 195 aa16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 DDX41Q9UJV9 622 aaKnown RBP16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 TAF6LQ9Y6J9 622 aa16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 MICAL3Q7RTP6 2002 aa16.14■□□□□ 0.17
SQSTM1-208ENST00000485412 ABHD14A-ACY1A0A1B0GW23 586 aa16.13■□□□□ 0.17
SQSTM1-208ENST00000485412 PI4K2BG5E9Z4 385 aa16.13■□□□□ 0.17
SQSTM1-208ENST00000485412 EFCAB14O75071 495 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms