RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 GPC6Q9Y625 555 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-209ENST00000479532 LAMB1P07942 1786 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 MYH8P13535 1937 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 A0A0D9SFI3 127 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 KHNYNO15037 678 aaKnown RBP7.31□□□□□ -1.24
SF3B1-209ENST00000479532 CELF2O95319 508 aaKnown RBP7.31□□□□□ -1.24
SF3B1-209ENST00000479532 NCLP19338 710 aaKnown RBP7.31□□□□□ -1.24
SF3B1-209ENST00000479532 IREB2P48200 963 aaKnown RBP7.31□□□□□ -1.24
SF3B1-209ENST00000479532 FKBP1BP68106 108 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 NFIAQ12857 509 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 DSC3Q14574 896 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 ARSJQ5FYB0 599 aaPredicted RBP7.31□□□□□ -1.24
SF3B1-209ENST00000479532 CCDC129Q6ZRS4 1044 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 NLRP8Q86W28 1048 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 SDR42E1Q8WUS8 393 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 SEC62Q99442 399 aaKnown RBP7.31□□□□□ -1.24
SF3B1-209ENST00000479532 TMEM39BQ9GZU3 492 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 ZNF287Q9HBT7 754 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 PCMTD2Q9NV79 361 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 MCM9Q9NXL9 1143 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 PI4KBQ9UBF8 816 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 SAP30BPQ9UHR5 308 aaKnown RBP7.31□□□□□ -1.24
SF3B1-209ENST00000479532 CTNNA3Q9UI47 895 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 CNTNAP1P78357 1384 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 ATRNL1Q5VV63 1379 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 BAZ2AQ9UIF9 1905 aaKnown RBP7.31□□□□□ -1.24
SF3B1-209ENST00000479532 PAPPA2Q9BXP8 1791 aa7.31□□□□□ -1.24
SF3B1-209ENST00000479532 REC8O95072 547 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 CHGBP05060 677 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 PCSK2P16519 638 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 MAPK8P45983 427 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 IDH3AP50213 366 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 IRAK1P51617 712 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 PLCB3Q01970 1234 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 TNP2Q05952 138 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 EHHADHQ08426 723 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 NBPF12Q5TAG4 269 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-209ENST00000479532 ZNF468Q5VIY5 522 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-209ENST00000479532 IER5Q5VY09 327 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 FOXP4Q8IVH2 680 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-209ENST00000479532 IFNL3Q8IZI9 196 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 ZIC5Q96T25 663 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 DSCC1Q9BVC3 393 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 ZNF341Q9BYN7 854 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 KRTAP4-9Q9BYQ8 210 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.3□□□□□ -1.24
SF3B1-209ENST00000479532 GBA2Q9HCG7 927 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-209ENST00000479532 NEUROD4Q9HD90 331 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 DCP1AQ9NPI6 582 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-209ENST00000479532 DDX4Q9NQI0 724 aaKnown RBP7.3□□□□□ -1.24
SF3B1-209ENST00000479532 SWAP70Q9UH65 585 aa7.3□□□□□ -1.24
SF3B1-209ENST00000479532 HERC5Q9UII4 1024 aaKnown RBP7.3□□□□□ -1.24
SF3B1-209ENST00000479532 SCAF8Q9UPN6 1271 aaKnown RBP7.3□□□□□ -1.24
SF3B1-209ENST00000479532 DDX60LQ5H9U9 1706 aaKnown RBP7.3□□□□□ -1.24
SF3B1-209ENST00000479532 ZMYM6O95789 1325 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 PASKQ96RG2 1323 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 DDTLA6NHG4 134 aaPredicted RBP7.29□□□□□ -1.24
SF3B1-209ENST00000479532 GSG1L2A8MUP6 293 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 MINDY4BA8MYZ0 360 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 M0R082 166 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 TRAF5O00463 557 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 SGSM2O43147 1006 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 PRKAB2O43741 272 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 HSPD1P10809 573 aaKnown RBP7.29□□□□□ -1.24
SF3B1-209ENST00000479532 PDE4BQ07343 736 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 HSP90AA2PQ14568 343 aaPredicted RBP7.29□□□□□ -1.24
SF3B1-209ENST00000479532 ALX1Q15699 326 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 IMMTQ16891 758 aaKnown RBP7.29□□□□□ -1.24
SF3B1-209ENST00000479532 SBK1Q52WX2 424 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 PRAMEF18Q5VWM3 479 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 LRRC69Q6ZNQ3 347 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 ZNF589Q86UQ0 364 aaPredicted RBP7.29□□□□□ -1.24
SF3B1-209ENST00000479532 ZNF417Q8TAU3 575 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 ALKBH8Q96BT7 664 aaKnown RBP7.29□□□□□ -1.24
SF3B1-209ENST00000479532 ZNF587Q96SQ5 575 aaPredicted RBP7.29□□□□□ -1.24
SF3B1-209ENST00000479532 NIF3L1Q9GZT8 377 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 EHD4Q9H223 541 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 FAM13BQ9NYF5 915 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 DMGDHQ9UI17 866 aaKnown RBP7.29□□□□□ -1.24
SF3B1-209ENST00000479532 SERPINB13Q9UIV8 391 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 PALD1Q9ULE6 856 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 ABT1Q9ULW3 272 aaKnown RBP7.29□□□□□ -1.24
SF3B1-209ENST00000479532 RNF112Q9ULX5 631 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 ANGEL1Q9UNK9 670 aaKnown RBP7.29□□□□□ -1.24
SF3B1-209ENST00000479532 CSADQ9Y600 493 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 LAMA4Q16363 1823 aa7.29□□□□□ -1.24
SF3B1-209ENST00000479532 A0A1W2PNR3 127 aa7.28□□□□□ -1.24
SF3B1-209ENST00000479532 ZNF213O14771 459 aa7.28□□□□□ -1.24
SF3B1-209ENST00000479532 OPLAHO14841 1288 aa7.28□□□□□ -1.24
SF3B1-209ENST00000479532 PCP11498 1178 aaKnown RBP7.28□□□□□ -1.24
SF3B1-209ENST00000479532 MCCP23508 829 aa7.28□□□□□ -1.24
SF3B1-209ENST00000479532 NT5C2P49902 561 aa7.28□□□□□ -1.24
SF3B1-209ENST00000479532 PPARAQ07869 468 aa7.28□□□□□ -1.24
SF3B1-209ENST00000479532 PRKG1Q13976 671 aa7.28□□□□□ -1.24
SF3B1-209ENST00000479532 SLC4A8Q2Y0W8 1093 aa7.28□□□□□ -1.24
SF3B1-209ENST00000479532 C8orf34Q49A92 452 aa7.28□□□□□ -1.24
SF3B1-209ENST00000479532 C12orf60Q5U649 245 aa7.28□□□□□ -1.24
SF3B1-209ENST00000479532 CTR9Q6PD62 1173 aa7.28□□□□□ -1.24
SF3B1-209ENST00000479532 BTLAQ7Z6A9 289 aa7.28□□□□□ -1.24
SF3B1-209ENST00000479532 ZFPM1Q8IX07 1006 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms