RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 CXCL17Q6UXB2 119 aa17.94■□□□□ 0.46
HMGA1-206ENST00000478214 VTI1AQ96AJ9 217 aa17.94■□□□□ 0.46
HMGA1-206ENST00000478214 STXBP3O00186 592 aa17.93■□□□□ 0.46
HMGA1-206ENST00000478214 TLE2Q04725 743 aa17.93■□□□□ 0.46
HMGA1-206ENST00000478214 NTRK3Q16288 839 aa17.93■□□□□ 0.46
HMGA1-206ENST00000478214 CHRDL2Q6WN34 429 aa17.93■□□□□ 0.46
HMGA1-206ENST00000478214 PHKBQ93100 1093 aa17.93■□□□□ 0.46
HMGA1-206ENST00000478214 MRVI1Q9Y6F6 885 aa17.93■□□□□ 0.46
HMGA1-206ENST00000478214 ELP1O95163 1332 aa17.93■□□□□ 0.46
HMGA1-206ENST00000478214 FRMPD4Q14CM0 1322 aa17.93■□□□□ 0.46
HMGA1-206ENST00000478214 ZEB2O60315 1214 aa17.92■□□□□ 0.46
HMGA1-206ENST00000478214 PPP1R18Q6NYC8 613 aa17.92■□□□□ 0.46
HMGA1-206ENST00000478214 IL17RAQ96F46 866 aa17.92■□□□□ 0.46
HMGA1-206ENST00000478214 ZNF274Q96GC6 653 aaPredicted RBP17.92■□□□□ 0.46
HMGA1-206ENST00000478214 BARHL2Q9NY43 387 aa17.92■□□□□ 0.46
HMGA1-206ENST00000478214 DDX41Q9UJV9 622 aaKnown RBP17.92■□□□□ 0.46
HMGA1-206ENST00000478214 COLQQ9Y215 455 aaPredicted RBP17.92■□□□□ 0.46
HMGA1-206ENST00000478214 hCG_1984214I3L0E3 225 aa17.91■□□□□ 0.46
HMGA1-206ENST00000478214 PRPF3O43395 683 aaKnown RBP17.91■□□□□ 0.46
HMGA1-206ENST00000478214 PQBP1O60828 265 aaKnown RBP17.91■□□□□ 0.46
HMGA1-206ENST00000478214 GH1P01241 217 aa17.91■□□□□ 0.46
HMGA1-206ENST00000478214 SCG2P13521 617 aa17.91■□□□□ 0.46
HMGA1-206ENST00000478214 IFNAR1P17181 557 aa17.91■□□□□ 0.46
HMGA1-206ENST00000478214 CPT1AP50416 773 aa17.91■□□□□ 0.46
HMGA1-206ENST00000478214 MRPS9P82933 396 aaKnown RBP17.91■□□□□ 0.46
HMGA1-206ENST00000478214 ARHGAP1Q07960 439 aa17.91■□□□□ 0.46
HMGA1-206ENST00000478214 STK3Q13188 491 aa17.91■□□□□ 0.46
HMGA1-206ENST00000478214 PKN1Q16512 942 aa17.91■□□□□ 0.46
HMGA1-206ENST00000478214 PFKFB3Q16875 520 aaPredicted RBP17.91■□□□□ 0.46
HMGA1-206ENST00000478214 ZNF713Q8N859 430 aaPredicted RBP17.91■□□□□ 0.46
HMGA1-206ENST00000478214 RIC8AQ9NPQ8 531 aa17.91■□□□□ 0.46
HMGA1-206ENST00000478214 RANBP2P49792 3224 aaKnown RBP17.9■□□□□ 0.46
HMGA1-206ENST00000478214 A0A0U1RQG5 324 aaPredicted RBP17.9■□□□□ 0.46
HMGA1-206ENST00000478214 SMCO2A6NFE2 343 aa17.9■□□□□ 0.46
HMGA1-206ENST00000478214 A6NJR5 290 aa17.9■□□□□ 0.46
HMGA1-206ENST00000478214 CABYRO75952 493 aa17.9■□□□□ 0.46
HMGA1-206ENST00000478214 MYL3P08590 195 aa17.9■□□□□ 0.46
HMGA1-206ENST00000478214 CDK7P50613 346 aa17.9■□□□□ 0.46
HMGA1-206ENST00000478214 AFG1LQ8WV93 481 aa17.9■□□□□ 0.46
HMGA1-206ENST00000478214 SLC26A6Q9BXS9 759 aa17.9■□□□□ 0.46
HMGA1-206ENST00000478214 ALDH8A1Q9H2A2 487 aaPredicted RBP17.9■□□□□ 0.46
HMGA1-206ENST00000478214 PRDM5Q9NQX1 630 aaPredicted RBP17.9■□□□□ 0.46
HMGA1-206ENST00000478214 PDLIM7Q9NR12 457 aa17.9■□□□□ 0.46
HMGA1-206ENST00000478214 RTEL1Q9NZ71 1219 aa17.9■□□□□ 0.46
HMGA1-206ENST00000478214 SPDYE3A6NKU9 549 aa17.89■□□□□ 0.45
HMGA1-206ENST00000478214 ARVCFO00192 962 aa17.89■□□□□ 0.45
HMGA1-206ENST00000478214 MAGEA10P43363 369 aaPredicted RBP17.89■□□□□ 0.45
HMGA1-206ENST00000478214 ADCY7P51828 1080 aa17.89■□□□□ 0.45
HMGA1-206ENST00000478214 AK2P54819 239 aa17.89■□□□□ 0.45
HMGA1-206ENST00000478214 PSMC6P62333 389 aa17.89■□□□□ 0.45
HMGA1-206ENST00000478214 PURAQ00577 322 aaKnown RBP17.89■□□□□ 0.45
HMGA1-206ENST00000478214 AKAP17AQ02040 695 aaKnown RBP17.89■□□□□ 0.45
HMGA1-206ENST00000478214 BRDTQ58F21 947 aaPredicted RBP17.89■□□□□ 0.45
HMGA1-206ENST00000478214 PCNX4Q63HM2 1172 aa17.89■□□□□ 0.45
HMGA1-206ENST00000478214 ANKRD33Q7Z3H0 272 aa17.89■□□□□ 0.45
HMGA1-206ENST00000478214 SH3RF1Q7Z6J0 888 aa17.89■□□□□ 0.45
HMGA1-206ENST00000478214 INPP4AQ96PE3 977 aaPredicted RBP17.89■□□□□ 0.45
HMGA1-206ENST00000478214 RNF26Q9BY78 433 aaPredicted RBP17.89■□□□□ 0.45
HMGA1-206ENST00000478214 POLR3EQ9NVU0 708 aa17.89■□□□□ 0.45
HMGA1-206ENST00000478214 RBM27Q9P2N5 1060 aaKnown RBP17.89■□□□□ 0.45
HMGA1-206ENST00000478214 PRKAG2Q9UGJ0 569 aa17.89■□□□□ 0.45
HMGA1-206ENST00000478214 PCDHA6Q9UN73 950 aa17.89■□□□□ 0.45
HMGA1-206ENST00000478214 PCDHA8Q9Y5H6 950 aa17.89■□□□□ 0.45
HMGA1-206ENST00000478214 GRIN2DO15399 1336 aa17.89■□□□□ 0.45
HMGA1-206ENST00000478214 TRIM43BA6NCK2 446 aa17.88■□□□□ 0.45
HMGA1-206ENST00000478214 DCDC2CA8MYV0 355 aa17.88■□□□□ 0.45
HMGA1-206ENST00000478214 SORBS3O60504 671 aa17.88■□□□□ 0.45
HMGA1-206ENST00000478214 STAM2O75886 525 aa17.88■□□□□ 0.45
HMGA1-206ENST00000478214 CLTBP09497 229 aa17.88■□□□□ 0.45
HMGA1-206ENST00000478214 SP2Q02086 613 aa17.88■□□□□ 0.45
HMGA1-206ENST00000478214 ITGA7Q13683 1181 aa17.88■□□□□ 0.45
HMGA1-206ENST00000478214 XRRA1Q6P2D8 792 aa17.88■□□□□ 0.45
HMGA1-206ENST00000478214 KCNV1Q6PIU1 500 aa17.88■□□□□ 0.45
HMGA1-206ENST00000478214 SLC43A3Q8NBI5 491 aa17.88■□□□□ 0.45
HMGA1-206ENST00000478214 TRIM43Q96BQ3 446 aaPredicted RBP17.88■□□□□ 0.45
HMGA1-206ENST00000478214 TOX2Q96NM4 488 aa17.88■□□□□ 0.45
HMGA1-206ENST00000478214 GDF15Q99988 308 aa17.88■□□□□ 0.45
HMGA1-206ENST00000478214 PRO3102Q9H379 93 aa17.88■□□□□ 0.45
HMGA1-206ENST00000478214 TPCN1Q9ULQ1 816 aa17.88■□□□□ 0.45
HMGA1-206ENST00000478214 CPLX1O14810 134 aa17.87■□□□□ 0.45
HMGA1-206ENST00000478214 GGPS1O95749 300 aa17.87■□□□□ 0.45
HMGA1-206ENST00000478214 MMP3P08254 477 aa17.87■□□□□ 0.45
HMGA1-206ENST00000478214 TGFB3P10600 412 aa17.87■□□□□ 0.45
HMGA1-206ENST00000478214 UBA1P22314 1058 aaKnown RBP17.87■□□□□ 0.45
HMGA1-206ENST00000478214 ICAM3P32942 547 aa17.87■□□□□ 0.45
HMGA1-206ENST00000478214 MDM2Q00987 491 aaPredicted RBP17.87■□□□□ 0.45
HMGA1-206ENST00000478214 FAAP100Q0VG06 881 aa17.87■□□□□ 0.45
HMGA1-206ENST00000478214 SEMA3FQ13275 785 aa17.87■□□□□ 0.45
HMGA1-206ENST00000478214 LAMC2Q13753 1193 aa17.87■□□□□ 0.45
HMGA1-206ENST00000478214 GNPTABQ3T906 1256 aa17.87■□□□□ 0.45
HMGA1-206ENST00000478214 DHX37Q8IY37 1157 aaKnown RBP17.87■□□□□ 0.45
HMGA1-206ENST00000478214 EMID1Q96A84 441 aaPredicted RBP17.87■□□□□ 0.45
HMGA1-206ENST00000478214 PGBD1Q96JS3 809 aa17.87■□□□□ 0.45
HMGA1-206ENST00000478214 MTG1Q9BT17 334 aaPredicted RBP17.87■□□□□ 0.45
HMGA1-206ENST00000478214 BCAS3Q9H6U6 928 aa17.87■□□□□ 0.45
HMGA1-206ENST00000478214 TMEM260Q9NX78 707 aa17.87■□□□□ 0.45
HMGA1-206ENST00000478214 SPATA31C2B4DYI2 1134 aa17.86■□□□□ 0.45
HMGA1-206ENST00000478214 ADAMTS3O15072 1205 aa17.86■□□□□ 0.45
HMGA1-206ENST00000478214 KPNA6O60684 536 aa17.86■□□□□ 0.45
HMGA1-206ENST00000478214 CLK2P49760 499 aaKnown RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms