RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 SF1Q15637 639 aaKnown RBP7□□□□□ -1.29
VPS50-214ENST00000477935 ZNF124Q15973 351 aa7□□□□□ -1.29
VPS50-214ENST00000477935 BHLHE22Q8NFJ8 381 aaPredicted RBP7□□□□□ -1.29
VPS50-214ENST00000477935 NPLOC4Q8TAT6 608 aa7□□□□□ -1.29
VPS50-214ENST00000477935 FRS2Q8WU20 508 aa7□□□□□ -1.29
VPS50-214ENST00000477935 SLC26A8Q96RN1 970 aa7□□□□□ -1.29
VPS50-214ENST00000477935 MMP19Q99542 508 aa7□□□□□ -1.29
VPS50-214ENST00000477935 KRTAP4-12Q9BQ66 201 aa7□□□□□ -1.29
VPS50-214ENST00000477935 MCOLN1Q9GZU1 580 aa7□□□□□ -1.29
VPS50-214ENST00000477935 PDLIM7Q9NR12 457 aa7□□□□□ -1.29
VPS50-214ENST00000477935 SAMD9Q5K651 1589 aa6.99□□□□□ -1.29
VPS50-214ENST00000477935 DNMT1P26358 1616 aaKnown RBP6.99□□□□□ -1.29
VPS50-214ENST00000477935 MYO3AQ8NEV4 1616 aa6.99□□□□□ -1.29
VPS50-214ENST00000477935 A0A1W2PQJ5 194 aa6.99□□□□□ -1.29
VPS50-214ENST00000477935 C7orf72A4D263 438 aa6.99□□□□□ -1.29
VPS50-214ENST00000477935 HRKO00198 91 aa6.99□□□□□ -1.29
VPS50-214ENST00000477935 PEX10O60683 326 aa6.99□□□□□ -1.29
VPS50-214ENST00000477935 TACR1P25103 407 aa6.99□□□□□ -1.29
VPS50-214ENST00000477935 ECI1P42126 302 aa6.99□□□□□ -1.29
VPS50-214ENST00000477935 GRIA2P42262 883 aa6.99□□□□□ -1.29
VPS50-214ENST00000477935 GFRA1P56159 465 aa6.99□□□□□ -1.29
VPS50-214ENST00000477935 PRSS53Q2L4Q9 553 aa6.99□□□□□ -1.29
VPS50-214ENST00000477935 MBLAC2Q68D91 279 aa6.99□□□□□ -1.29
VPS50-214ENST00000477935 SREK1Q8WXA9 508 aaKnown RBP6.99□□□□□ -1.29
VPS50-214ENST00000477935 PPP1R16BQ96T49 567 aa6.99□□□□□ -1.29
VPS50-214ENST00000477935 SIRPGQ9P1W8 387 aa6.99□□□□□ -1.29
VPS50-214ENST00000477935 SPATA31A6Q5VVP1 1343 aa6.99□□□□□ -1.29
VPS50-214ENST00000477935 CDK12Q9NYV4 1490 aaPredicted RBP6.98□□□□□ -1.29
VPS50-214ENST00000477935 RNF17Q9BXT8 1623 aaKnown RBP6.98□□□□□ -1.29
VPS50-214ENST00000477935 TNRQ92752 1358 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 ARHGAP5Q13017 1502 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 KRTAP9-6A0A140TA67 174 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 CCDC85CA6NKD9 419 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 NUDT19A8MXV4 375 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 PDPK1O15530 556 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 TSPAN15O95858 294 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 CPP00450 1065 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 KRT1P04264 644 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 KCNJ6P48051 423 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 YBX1P67809 324 aaKnown RBP6.98□□□□□ -1.29
VPS50-214ENST00000477935 PKN1Q16512 942 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 MEX3CQ5U5Q3 659 aaKnown RBP6.98□□□□□ -1.29
VPS50-214ENST00000477935 KRTAP19-1Q8IUB9 90 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 KREMEN2Q8NCW0 462 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 SGSM3Q96HU1 749 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 CCDC140Q96MF4 163 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 KLHL14Q9P2G3 628 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 GULP1Q9UBP9 304 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 RWDD3Q9Y3V2 267 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 SPAG9O60271 1321 aaKnown RBP6.98□□□□□ -1.29
VPS50-214ENST00000477935 ABCA6Q8N139 1617 aa6.98□□□□□ -1.29
VPS50-214ENST00000477935 IQCA1LA6NCM1 817 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 ETV2O00321 342 aaPredicted RBP6.97□□□□□ -1.29
VPS50-214ENST00000477935 ABLIM1O14639 778 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 SRGAP3O43295 1099 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 PPP1R11O60927 126 aaPredicted RBP6.97□□□□□ -1.29
VPS50-214ENST00000477935 SEMA7AO75326 666 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 DBHP09172 617 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 GLDCP23378 1020 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 VIPR1P32241 457 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 SERINC3Q13530 473 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 RASGRF1Q13972 1273 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 RAB3GAP1Q15042 981 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 INF2Q27J81 1249 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 E4F1Q66K89 784 aaPredicted RBP6.97□□□□□ -1.29
VPS50-214ENST00000477935 BICRALQ6AI39 1079 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 TMEM132EQ6IEE7 984 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 RPTNQ6XPR3 784 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 SUPT6HQ7KZ85 1726 aaKnown RBP6.97□□□□□ -1.29
VPS50-214ENST00000477935 CCDC103Q8IW40 242 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 LZTR1Q8N653 840 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 TMEM145Q8NBT3 493 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 KCNN1Q92952 543 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 C1orf159Q96HA4 380 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 NEURL4Q96JN8 1562 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 CCDC113Q9H0I3 377 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 FBLN5Q9UBX5 448 aa6.97□□□□□ -1.29
VPS50-214ENST00000477935 TMEFF2Q9UIK5 374 aaPredicted RBP6.97□□□□□ -1.29
VPS50-214ENST00000477935 KDM5DQ9BY66 1539 aa6.96□□□□□ -1.29
VPS50-214ENST00000477935 FAM135AQ9P2D6 1515 aa6.96□□□□□ -1.29
VPS50-214ENST00000477935 TEX51A0A1B0GUA7 166 aa6.96□□□□□ -1.3
VPS50-214ENST00000477935 ARNTLO00327 626 aa6.96□□□□□ -1.3
VPS50-214ENST00000477935 MEFVO15553 781 aaPredicted RBP6.96□□□□□ -1.3
VPS50-214ENST00000477935 NPHS1O60500 1241 aa6.96□□□□□ -1.3
VPS50-214ENST00000477935 CYBBP04839 570 aa6.96□□□□□ -1.3
VPS50-214ENST00000477935 TMEM253P0C7T8 217 aa6.96□□□□□ -1.3
VPS50-214ENST00000477935 C1QTNF9P0C862 333 aa6.96□□□□□ -1.3
VPS50-214ENST00000477935 SRSF3P84103 164 aaKnown RBP6.96□□□□□ -1.3
VPS50-214ENST00000477935 TMEM62Q0P6H9 643 aa6.96□□□□□ -1.3
VPS50-214ENST00000477935 HSP90AA2PQ14568 343 aaPredicted RBP6.96□□□□□ -1.3
VPS50-214ENST00000477935 NR1I3Q14994 352 aa6.96□□□□□ -1.3
VPS50-214ENST00000477935 OLFML2BQ68BL8 750 aa6.96□□□□□ -1.3
VPS50-214ENST00000477935 IQCEQ6IPM2 695 aa6.96□□□□□ -1.3
VPS50-214ENST00000477935 PAQR3Q6TCH7 311 aa6.96□□□□□ -1.3
VPS50-214ENST00000477935 ZNF669Q96BR6 464 aaPredicted RBP6.96□□□□□ -1.3
VPS50-214ENST00000477935 IER2Q9BTL4 223 aa6.96□□□□□ -1.3
VPS50-214ENST00000477935 ARHGEF4Q9NR80 690 aa6.96□□□□□ -1.3
VPS50-214ENST00000477935 MBD1Q9UIS9 605 aaPredicted RBP6.96□□□□□ -1.3
VPS50-214ENST00000477935 CLIP1P30622 1438 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 MIA2Q96PC5 1412 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms