RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 EIF3JO75822 258 aaKnown RBP8.18□□□□□ -1.1
HDAC3-207ENST00000475549 CFBP00751 764 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 IQCF3P0C7M6 154 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 SUPT20HL2P0C7V6 817 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 HIC1Q14526 733 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 GRM4Q14833 912 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 STXBP2Q15833 593 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 ARHGEF16Q5VV41 709 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 GDF6Q6KF10 455 aaPredicted RBP8.18□□□□□ -1.1
HDAC3-207ENST00000475549 DEFB128Q7Z7B8 93 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 VSIG10LQ86VR7 867 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 SKAP1Q86WV1 359 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 MCF2L2Q86YR7 1114 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 IL31RAQ8NI17 732 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 GPKOWQ92917 476 aaPredicted RBP eCLIP8.18□□□□□ -1.1
HDAC3-207ENST00000475549 MAP4K1Q92918 833 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 PIGSQ96S52 555 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 AMNQ9BXJ7 453 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 NKX2-4Q9H2Z4 354 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 PXMP2Q9NR77 195 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 PCDHA1Q9Y5I3 950 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 LCTP09848 1927 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 MCM3APO60318 1980 aa8.17□□□□□ -1.1
HDAC3-207ENST00000475549 IFIT3O14879 490 aaKnown RBP8.17□□□□□ -1.1
HDAC3-207ENST00000475549 KPNA6O60684 536 aa8.17□□□□□ -1.1
HDAC3-207ENST00000475549 ARHGEF15O94989 841 aa8.17□□□□□ -1.1
HDAC3-207ENST00000475549 GH1P01241 217 aa8.17□□□□□ -1.1
HDAC3-207ENST00000475549 PTGISQ16647 500 aa8.17□□□□□ -1.1
HDAC3-207ENST00000475549 TCTN1Q2MV58 587 aa8.17□□□□□ -1.1
HDAC3-207ENST00000475549 FAM47CQ5HY64 1035 aa8.17□□□□□ -1.1
HDAC3-207ENST00000475549 TRAF7Q6Q0C0 670 aa8.17□□□□□ -1.1
HDAC3-207ENST00000475549 SESTD1Q86VW0 696 aa8.17□□□□□ -1.1
HDAC3-207ENST00000475549 MB21D2Q8IYB1 491 aaPredicted RBP8.17□□□□□ -1.1
HDAC3-207ENST00000475549 RPUSD2Q8IZ73 545 aaKnown RBP8.17□□□□□ -1.1
HDAC3-207ENST00000475549 DHX38Q92620 1227 aaKnown RBP8.17□□□□□ -1.1
HDAC3-207ENST00000475549 WNT8BQ93098 351 aa8.17□□□□□ -1.1
HDAC3-207ENST00000475549 EMID1Q96A84 441 aaPredicted RBP8.17□□□□□ -1.1
HDAC3-207ENST00000475549 MPHOSPH6Q99547 160 aaKnown RBP8.17□□□□□ -1.1
HDAC3-207ENST00000475549 PDCD2LQ9BRP1 358 aa8.17□□□□□ -1.1
HDAC3-207ENST00000475549 TELO2Q9Y4R8 837 aa8.17□□□□□ -1.1
HDAC3-207ENST00000475549 RAD50Q92878 1312 aa8.17□□□□□ -1.1
HDAC3-207ENST00000475549 LRRC37A2A6NM11 1700 aa8.17□□□□□ -1.1
HDAC3-207ENST00000475549 B4DLN1 442 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 HAS3O00219 553 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 PITPNM1O00562 1244 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 SORBS3O60504 671 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 REV3LO60673 3130 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 HOXD8P13378 290 aaPredicted RBP8.16□□□□□ -1.1
HDAC3-207ENST00000475549 ATP2A2P16615 1042 aaKnown RBP8.16□□□□□ -1.1
HDAC3-207ENST00000475549 MRPL12P52815 198 aaKnown RBP8.16□□□□□ -1.1
HDAC3-207ENST00000475549 CHMP4BP1P59074 171 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 MRPS9P82933 396 aaKnown RBP8.16□□□□□ -1.1
HDAC3-207ENST00000475549 ZNF200P98182 395 aaPredicted RBP8.16□□□□□ -1.1
HDAC3-207ENST00000475549 PTPN11Q06124 597 aaPredicted RBP8.16□□□□□ -1.1
HDAC3-207ENST00000475549 PGM5Q15124 567 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 HSDL1Q3SXM5 330 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 BRDTQ58F21 947 aaPredicted RBP8.16□□□□□ -1.1
HDAC3-207ENST00000475549 MYSM1Q5VVJ2 828 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 TMCO2Q7Z6W1 182 aaPredicted RBP8.16□□□□□ -1.1
HDAC3-207ENST00000475549 HOMER1Q86YM7 354 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 NCOA7Q8NI08 942 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 C16orf70Q9BSU1 422 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 MYL10Q9BUA6 226 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 LSG1Q9H089 658 aaKnown RBP8.16□□□□□ -1.1
HDAC3-207ENST00000475549 SLC28A3Q9HAS3 691 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 MAP3K20Q9NYL2 800 aaKnown RBP8.16□□□□□ -1.1
HDAC3-207ENST00000475549 HDAC6Q9UBN7 1215 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 MSRAQ9UJ68 235 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 RBM8AQ9Y5S9 174 aaKnown RBP8.16□□□□□ -1.1
HDAC3-207ENST00000475549 SLC4A7Q9Y6M7 1214 aa8.16□□□□□ -1.1
HDAC3-207ENST00000475549 PNMA6FA0A0J9YX94 578 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 EPOPA6NHQ4 379 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 RFXAPO00287 272 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 NBNO60934 754 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 PPFIA4O75335 1185 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 F2P00734 622 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 ZNF286BP0CG31 522 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 MYCLP12524 364 aaPredicted RBP8.15□□□□□ -1.1
HDAC3-207ENST00000475549 CASTP20810 708 aaKnown RBP8.15□□□□□ -1.1
HDAC3-207ENST00000475549 TRDNQ13061 729 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 LAMC2Q13753 1193 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 MBTPS1Q14703 1052 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 RAB30Q15771 203 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 CCDC85BQ15834 202 aaPredicted RBP8.15□□□□□ -1.1
HDAC3-207ENST00000475549 DGKDQ16760 1214 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 TRIM71Q2Q1W2 868 aaKnown RBP8.15□□□□□ -1.1
HDAC3-207ENST00000475549 TMEM67Q5HYA8 995 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 CELF3Q5SZQ8 465 aaKnown RBP8.15□□□□□ -1.1
HDAC3-207ENST00000475549 SPRED2Q7Z698 418 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 FCHSD1Q86WN1 690 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 CMTR1Q8N1G2 835 aaKnown RBP8.15□□□□□ -1.1
HDAC3-207ENST00000475549 PPTC7Q8NI37 304 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 RUFY2Q8WXA3 655 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 PPM1EQ8WY54 764 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 OSBPL7Q9BZF2 842 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 LY9Q9HBG7 655 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 GTF2IRD1Q9UHL9 959 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 PCDHA11Q9Y5I1 949 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 MRVI1Q9Y6F6 885 aa8.15□□□□□ -1.1
HDAC3-207ENST00000475549 ZBBXA8MT70 800 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms