RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 SPZ1Q9BXG8 430 aa21.53■■□□□ 1.04
COL7A1-209ENST00000474432 ANO2Q9NQ90 1003 aa21.53■■□□□ 1.04
COL7A1-209ENST00000474432 SCN5AQ14524 2016 aa21.53■■□□□ 1.04
COL7A1-209ENST00000474432 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.52■■□□□ 1.04
COL7A1-209ENST00000474432 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.52■■□□□ 1.04
COL7A1-209ENST00000474432 BRDTQ58F21 947 aaPredicted RBP21.52■■□□□ 1.04
COL7A1-209ENST00000474432 NFRKBQ6P4R8 1299 aa21.52■■□□□ 1.04
COL7A1-209ENST00000474432 EMID1Q96A84 441 aaPredicted RBP21.52■■□□□ 1.04
COL7A1-209ENST00000474432 TMEM87BQ96K49 555 aa21.52■■□□□ 1.04
COL7A1-209ENST00000474432 CTAGE1Q96RT6 745 aa21.52■■□□□ 1.04
COL7A1-209ENST00000474432 CXXC1Q9P0U4 656 aaPredicted RBP21.52■■□□□ 1.04
COL7A1-209ENST00000474432 GRXCR1A8MXD5 290 aa21.51■■□□□ 1.03
COL7A1-209ENST00000474432 GCOM1H8Y6P7 765 aaPredicted RBP21.51■■□□□ 1.03
COL7A1-209ENST00000474432 PLEKHA8P1O95397 391 aa21.51■■□□□ 1.03
COL7A1-209ENST00000474432 POLR2MP0CAP2 368 aa21.51■■□□□ 1.03
COL7A1-209ENST00000474432 SMARCA1P28370 1054 aa21.51■■□□□ 1.03
COL7A1-209ENST00000474432 LIFRP42702 1097 aa21.51■■□□□ 1.03
COL7A1-209ENST00000474432 PSRC1Q6PGN9 363 aaPredicted RBP21.51■■□□□ 1.03
COL7A1-209ENST00000474432 CASC1Q6TDU7 716 aa21.51■■□□□ 1.03
COL7A1-209ENST00000474432 SRBD1Q8N5C6 995 aaKnown RBP21.51■■□□□ 1.03
COL7A1-209ENST00000474432 PIBF1Q8WXW3 757 aa21.51■■□□□ 1.03
COL7A1-209ENST00000474432 HERVK_113Q902F9 699 aa21.51■■□□□ 1.03
COL7A1-209ENST00000474432 SCLYQ96I15 445 aa21.51■■□□□ 1.03
COL7A1-209ENST00000474432 ZFP91Q96JP5 570 aaPredicted RBP21.51■■□□□ 1.03
COL7A1-209ENST00000474432 CDX2Q99626 313 aaPredicted RBP21.51■■□□□ 1.03
COL7A1-209ENST00000474432 FRMPD4Q14CM0 1322 aa21.51■■□□□ 1.03
COL7A1-209ENST00000474432 SUPT20HL2P0C7V6 817 aa21.5■■□□□ 1.03
COL7A1-209ENST00000474432 MYCLP12524 364 aaPredicted RBP21.5■■□□□ 1.03
COL7A1-209ENST00000474432 RXRAP19793 462 aa21.5■■□□□ 1.03
COL7A1-209ENST00000474432 SP2Q02086 613 aa21.5■■□□□ 1.03
COL7A1-209ENST00000474432 PTPN11Q06124 597 aaPredicted RBP21.5■■□□□ 1.03
COL7A1-209ENST00000474432 TRAF1Q13077 416 aa21.5■■□□□ 1.03
COL7A1-209ENST00000474432 GPKOWQ92917 476 aaPredicted RBP eCLIP21.5■■□□□ 1.03
COL7A1-209ENST00000474432 LRRC2Q9BYS8 371 aa21.5■■□□□ 1.03
COL7A1-209ENST00000474432 GBF1Q92538 1859 aa21.49■■□□□ 1.03
COL7A1-209ENST00000474432 TRIP12Q14669 1992 aaPredicted RBP21.49■■□□□ 1.03
COL7A1-209ENST00000474432 HOXD8P13378 290 aaPredicted RBP21.49■■□□□ 1.03
COL7A1-209ENST00000474432 DNAJB2P25686 324 aa21.49■■□□□ 1.03
COL7A1-209ENST00000474432 FAM47CQ5HY64 1035 aa21.49■■□□□ 1.03
COL7A1-209ENST00000474432 FCHSD1Q86WN1 690 aa21.49■■□□□ 1.03
COL7A1-209ENST00000474432 RASEFQ8IZ41 740 aa21.49■■□□□ 1.03
COL7A1-209ENST00000474432 CMTR1Q8N1G2 835 aaKnown RBP21.49■■□□□ 1.03
COL7A1-209ENST00000474432 TMTC2Q8N394 836 aa21.49■■□□□ 1.03
COL7A1-209ENST00000474432 CTCFLQ8NI51 663 aaPredicted RBP21.49■■□□□ 1.03
COL7A1-209ENST00000474432 MRVI1Q9Y6F6 885 aa21.49■■□□□ 1.03
COL7A1-209ENST00000474432 TANC1Q9C0D5 1861 aa21.49■■□□□ 1.03
COL7A1-209ENST00000474432 TMEM265A0A087WTH1 108 aa21.48■■□□□ 1.03
COL7A1-209ENST00000474432 FGBP02675 491 aa21.48■■□□□ 1.03
COL7A1-209ENST00000474432 PBX2P40425 430 aa21.48■■□□□ 1.03
COL7A1-209ENST00000474432 MRPS9P82933 396 aaKnown RBP21.48■■□□□ 1.03
COL7A1-209ENST00000474432 MYSM1Q5VVJ2 828 aa21.48■■□□□ 1.03
COL7A1-209ENST00000474432 SESTD1Q86VW0 696 aa21.48■■□□□ 1.03
COL7A1-209ENST00000474432 SGMS1Q86VZ5 419 aa21.48■■□□□ 1.03
COL7A1-209ENST00000474432 RAB11FIP4Q86YS3 637 aa21.48■■□□□ 1.03
COL7A1-209ENST00000474432 SLC17A8Q8NDX2 589 aa21.48■■□□□ 1.03
COL7A1-209ENST00000474432 BCAS3Q9H6U6 928 aa21.48■■□□□ 1.03
COL7A1-209ENST00000474432 TET1Q8NFU7 2136 aa21.47■■□□□ 1.03
COL7A1-209ENST00000474432 HAS3O00219 553 aa21.47■■□□□ 1.03
COL7A1-209ENST00000474432 MEIS2O14770 477 aa21.47■■□□□ 1.03
COL7A1-209ENST00000474432 KIF5BP33176 963 aa21.47■■□□□ 1.03
COL7A1-209ENST00000474432 EXOSC10Q01780 885 aaKnown RBP21.47■■□□□ 1.03
COL7A1-209ENST00000474432 LAMC2Q13753 1193 aa21.47■■□□□ 1.03
COL7A1-209ENST00000474432 GDF6Q6KF10 455 aaPredicted RBP21.47■■□□□ 1.03
COL7A1-209ENST00000474432 PPTC7Q8NI37 304 aa21.47■■□□□ 1.03
COL7A1-209ENST00000474432 LZTS2Q9BRK4 669 aa21.47■■□□□ 1.03
COL7A1-209ENST00000474432 PBX4Q9BYU1 374 aa21.47■■□□□ 1.03
COL7A1-209ENST00000474432 DOCK5Q9H7D0 1870 aa21.46■■□□□ 1.03
COL7A1-209ENST00000474432 CCDC69A6NI79 296 aa21.46■■□□□ 1.03
COL7A1-209ENST00000474432 CASTP20810 708 aaKnown RBP21.46■■□□□ 1.03
COL7A1-209ENST00000474432 UBA1P22314 1058 aaKnown RBP21.46■■□□□ 1.03
COL7A1-209ENST00000474432 CCND2P30279 289 aa21.46■■□□□ 1.03
COL7A1-209ENST00000474432 SEMA3FQ13275 785 aa21.46■■□□□ 1.03
COL7A1-209ENST00000474432 DGKDQ16760 1214 aa21.46■■□□□ 1.03
COL7A1-209ENST00000474432 ADCK5Q3MIX3 580 aa21.46■■□□□ 1.03
COL7A1-209ENST00000474432 HSDL1Q3SXM5 330 aa21.46■■□□□ 1.03
COL7A1-209ENST00000474432 TSGA10IPQ3SY00 556 aa21.46■■□□□ 1.03
COL7A1-209ENST00000474432 CELF3Q5SZQ8 465 aaKnown RBP21.46■■□□□ 1.03
COL7A1-209ENST00000474432 USP17L6PQ6QN14 398 aa21.46■■□□□ 1.03
COL7A1-209ENST00000474432 NFXL1Q6ZNB6 911 aa21.46■■□□□ 1.03
COL7A1-209ENST00000474432 OTOP2Q7RTS6 562 aa21.46■■□□□ 1.03
COL7A1-209ENST00000474432 DHX37Q8IY37 1157 aaKnown RBP21.46■■□□□ 1.03
COL7A1-209ENST00000474432 MYLIPQ8WY64 445 aa21.46■■□□□ 1.03
COL7A1-209ENST00000474432 RRP36Q96EU6 259 aaKnown RBP21.46■■□□□ 1.03
COL7A1-209ENST00000474432 CHD9Q3L8U1 2897 aa21.46■■□□□ 1.03
COL7A1-209ENST00000474432 PIK3CDO00329 1044 aa21.45■■□□□ 1.02
COL7A1-209ENST00000474432 CDC45O75419 566 aa21.45■■□□□ 1.02
COL7A1-209ENST00000474432 F2P00734 622 aa21.45■■□□□ 1.02
COL7A1-209ENST00000474432 GNAQP50148 359 aa21.45■■□□□ 1.02
COL7A1-209ENST00000474432 GRIN2CQ14957 1233 aa21.45■■□□□ 1.02
COL7A1-209ENST00000474432 KCNV1Q6PIU1 500 aa21.45■■□□□ 1.02
COL7A1-209ENST00000474432 DHX38Q92620 1227 aaKnown RBP21.45■■□□□ 1.02
COL7A1-209ENST00000474432 INPP4AQ96PE3 977 aaPredicted RBP21.45■■□□□ 1.02
COL7A1-209ENST00000474432 hCG_1642624A0A1W2PR95 340 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 PITPNM1O00562 1244 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 SORBS3O60504 671 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 GGPS1O95749 300 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 IQCF3P0C7M6 154 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 ZNF286BP0CG31 522 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 TGFB3P10600 412 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 ICAM3P32942 547 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms