RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 SYNE3Q6ZMZ3 975 aa20.72■□□□□ 0.91
UPF3A-203ENST00000474056 BRPF3Q9ULD4 1205 aa20.72■□□□□ 0.91
UPF3A-203ENST00000474056 GH1P01241 217 aa20.71■□□□□ 0.91
UPF3A-203ENST00000474056 ARHGAP1Q07960 439 aa20.71■□□□□ 0.91
UPF3A-203ENST00000474056 SHHQ15465 462 aa20.71■□□□□ 0.91
UPF3A-203ENST00000474056 BRDTQ58F21 947 aaPredicted RBP20.71■□□□□ 0.91
UPF3A-203ENST00000474056 ZFP91Q96JP5 570 aaPredicted RBP20.71■□□□□ 0.91
UPF3A-203ENST00000474056 DDX41Q9UJV9 622 aaKnown RBP20.71■□□□□ 0.91
UPF3A-203ENST00000474056 MRVI1Q9Y6F6 885 aa20.71■□□□□ 0.91
UPF3A-203ENST00000474056 TRIP12Q14669 1992 aaPredicted RBP20.71■□□□□ 0.91
UPF3A-203ENST00000474056 CNTNAP5Q8WYK1 1306 aa20.71■□□□□ 0.91
UPF3A-203ENST00000474056 REC8O95072 547 aa20.7■□□□□ 0.9
UPF3A-203ENST00000474056 TIMP1P01033 207 aa20.7■□□□□ 0.9
UPF3A-203ENST00000474056 HMGB1P09429 215 aaKnown RBP20.7■□□□□ 0.9
UPF3A-203ENST00000474056 EPHB4P54760 987 aa20.7■□□□□ 0.9
UPF3A-203ENST00000474056 ERICH6BQ5W0A0 696 aa20.7■□□□□ 0.9
UPF3A-203ENST00000474056 USP17L6PQ6QN14 398 aa20.7■□□□□ 0.9
UPF3A-203ENST00000474056 VSIG10LQ86VR7 867 aa20.7■□□□□ 0.9
UPF3A-203ENST00000474056 AFG1LQ8WV93 481 aa20.7■□□□□ 0.9
UPF3A-203ENST00000474056 JAKMIP1Q96N16 626 aaKnown RBP20.7■□□□□ 0.9
UPF3A-203ENST00000474056 MTG1Q9BT17 334 aaPredicted RBP20.7■□□□□ 0.9
UPF3A-203ENST00000474056 PPP1R12CQ9BZL4 782 aa20.7■□□□□ 0.9
UPF3A-203ENST00000474056 FRMPD4Q14CM0 1322 aa20.7■□□□□ 0.9
UPF3A-203ENST00000474056 KLF18A0A0U1RQI7 1052 aa20.69■□□□□ 0.9
UPF3A-203ENST00000474056 MEIS2O14770 477 aa20.69■□□□□ 0.9
UPF3A-203ENST00000474056 ZBTB43O43298 467 aa20.69■□□□□ 0.9
UPF3A-203ENST00000474056 B4GALT4O60513 344 aa20.69■□□□□ 0.9
UPF3A-203ENST00000474056 CENPBP07199 599 aaPredicted RBP20.69■□□□□ 0.9
UPF3A-203ENST00000474056 MMP3P08254 477 aa20.69■□□□□ 0.9
UPF3A-203ENST00000474056 CCND2P30279 289 aa20.69■□□□□ 0.9
UPF3A-203ENST00000474056 FPGSQ05932 587 aa20.69■□□□□ 0.9
UPF3A-203ENST00000474056 PPP1R13LQ8WUF5 828 aa20.69■□□□□ 0.9
UPF3A-203ENST00000474056 SEZ6LQ9BYH1 1024 aa20.69■□□□□ 0.9
UPF3A-203ENST00000474056 RBM28Q9NW13 759 aaKnown RBP20.69■□□□□ 0.9
UPF3A-203ENST00000474056 SCN5AQ14524 2016 aa20.69■□□□□ 0.9
UPF3A-203ENST00000474056 RTN1Q16799 776 aa20.68■□□□□ 0.9
UPF3A-203ENST00000474056 Q6ZUG5 572 aa20.68■□□□□ 0.9
UPF3A-203ENST00000474056 SMARCC2Q8TAQ2 1214 aa20.68■□□□□ 0.9
UPF3A-203ENST00000474056 GPKOWQ92917 476 aaPredicted RBP eCLIP20.68■□□□□ 0.9
UPF3A-203ENST00000474056 TRPV6Q9H1D0 765 aa20.68■□□□□ 0.9
UPF3A-203ENST00000474056 ALDH8A1Q9H2A2 487 aaPredicted RBP20.68■□□□□ 0.9
UPF3A-203ENST00000474056 GOLGA8AA7E2F4 631 aa20.67■□□□□ 0.9
UPF3A-203ENST00000474056 GOLGA8BA8MQT2 603 aa20.67■□□□□ 0.9
UPF3A-203ENST00000474056 CDC27P30260 824 aa20.67■□□□□ 0.9
UPF3A-203ENST00000474056 MRPS9P82933 396 aaKnown RBP20.67■□□□□ 0.9
UPF3A-203ENST00000474056 NBPF20Q3BBV1 942 aa20.67■□□□□ 0.9
UPF3A-203ENST00000474056 MFSD5Q6N075 450 aa20.67■□□□□ 0.9
UPF3A-203ENST00000474056 BLOC1S2Q6QNY1 142 aa20.67■□□□□ 0.9
UPF3A-203ENST00000474056 CUL5Q93034 780 aa20.67■□□□□ 0.9
UPF3A-203ENST00000474056 FAM217BQ9NTX9 383 aaPredicted RBP20.67■□□□□ 0.9
UPF3A-203ENST00000474056 UMODL1Q5DID0 1318 aa20.67■□□□□ 0.9
UPF3A-203ENST00000474056 TANC1Q9C0D5 1861 aa20.67■□□□□ 0.9
UPF3A-203ENST00000474056 PIK3CDO00329 1044 aa20.66■□□□□ 0.9
UPF3A-203ENST00000474056 SORBS3O60504 671 aa20.66■□□□□ 0.9
UPF3A-203ENST00000474056 KPNA6O60684 536 aa20.66■□□□□ 0.9
UPF3A-203ENST00000474056 CYP2C18P33260 490 aa20.66■□□□□ 0.9
UPF3A-203ENST00000474056 FGD1P98174 961 aa20.66■□□□□ 0.9
UPF3A-203ENST00000474056 APOBRQ0VD83 1088 aa20.66■□□□□ 0.9
UPF3A-203ENST00000474056 FUT2Q10981 343 aa20.66■□□□□ 0.9
UPF3A-203ENST00000474056 EMID1Q96A84 441 aaPredicted RBP20.66■□□□□ 0.9
UPF3A-203ENST00000474056 TRMT13Q9NUP7 481 aaKnown RBP20.66■□□□□ 0.9
UPF3A-203ENST00000474056 NAP1L2Q9ULW6 460 aaPredicted RBP20.66■□□□□ 0.9
UPF3A-203ENST00000474056 CASTP20810 708 aaKnown RBP20.65■□□□□ 0.9
UPF3A-203ENST00000474056 UBA1P22314 1058 aaKnown RBP20.65■□□□□ 0.9
UPF3A-203ENST00000474056 RPS6KB1P23443 525 aa20.65■□□□□ 0.9
UPF3A-203ENST00000474056 SP2Q02086 613 aa20.65■□□□□ 0.9
UPF3A-203ENST00000474056 FAM47CQ5HY64 1035 aa20.65■□□□□ 0.9
UPF3A-203ENST00000474056 WWC2Q6AWC2 1192 aa20.65■□□□□ 0.9
UPF3A-203ENST00000474056 HEATR3Q7Z4Q2 680 aa20.65■□□□□ 0.9
UPF3A-203ENST00000474056 DHX37Q8IY37 1157 aaKnown RBP20.65■□□□□ 0.9
UPF3A-203ENST00000474056 BRF1Q92994 677 aa20.65■□□□□ 0.9
UPF3A-203ENST00000474056 HIPK3Q9H422 1215 aa20.65■□□□□ 0.9
UPF3A-203ENST00000474056 PSTPIP2Q9H939 334 aa20.65■□□□□ 0.9
UPF3A-203ENST00000474056 LAMA2P24043 3122 aaKnown RBP20.64■□□□□ 0.89
UPF3A-203ENST00000474056 EPB41L2O43491 1005 aaKnown RBP20.64■□□□□ 0.89
UPF3A-203ENST00000474056 GGPS1O95749 300 aa20.64■□□□□ 0.89
UPF3A-203ENST00000474056 CSF2RAP15509 400 aa20.64■□□□□ 0.89
UPF3A-203ENST00000474056 RCAN1P53805 252 aa20.64■□□□□ 0.89
UPF3A-203ENST00000474056 CHMP4BP1P59074 171 aa20.64■□□□□ 0.89
UPF3A-203ENST00000474056 PPIGQ13427 754 aaKnown RBP eCLIP20.64■□□□□ 0.89
UPF3A-203ENST00000474056 LAMC2Q13753 1193 aa20.64■□□□□ 0.89
UPF3A-203ENST00000474056 UBE2SQ16763 222 aa20.64■□□□□ 0.89
UPF3A-203ENST00000474056 MYSM1Q5VVJ2 828 aa20.64■□□□□ 0.89
UPF3A-203ENST00000474056 GPR153Q6NV75 609 aa20.64■□□□□ 0.89
UPF3A-203ENST00000474056 NFRKBQ6P4R8 1299 aa20.64■□□□□ 0.89
UPF3A-203ENST00000474056 KCNV1Q6PIU1 500 aa20.64■□□□□ 0.89
UPF3A-203ENST00000474056 TMEM199Q8N511 208 aa20.64■□□□□ 0.89
UPF3A-203ENST00000474056 PPTC7Q8NI37 304 aa20.64■□□□□ 0.89
UPF3A-203ENST00000474056 KAT2BQ92831 832 aa20.64■□□□□ 0.89
UPF3A-203ENST00000474056 INPP4AQ96PE3 977 aaPredicted RBP20.64■□□□□ 0.89
UPF3A-203ENST00000474056 NOC4LQ9BVI4 516 aaKnown RBP20.64■□□□□ 0.89
UPF3A-203ENST00000474056 USP26Q9BXU7 913 aa20.64■□□□□ 0.89
UPF3A-203ENST00000474056 RTEL1Q9NZ71 1219 aa20.64■□□□□ 0.89
UPF3A-203ENST00000474056 CYP2C9P11712 490 aa20.63■□□□□ 0.89
UPF3A-203ENST00000474056 METAP2P50579 478 aaKnown RBP eCLIP20.63■□□□□ 0.89
UPF3A-203ENST00000474056 SEMA3FQ13275 785 aa20.63■□□□□ 0.89
UPF3A-203ENST00000474056 DGKDQ16760 1214 aa20.63■□□□□ 0.89
UPF3A-203ENST00000474056 CELF3Q5SZQ8 465 aaKnown RBP20.63■□□□□ 0.89
UPF3A-203ENST00000474056 TYW1BQ6NUM6 668 aa20.63■□□□□ 0.89
UPF3A-203ENST00000474056 Q7L0L9 218 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms