RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 SYCE1Q8N0S2 351 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 ZBTB9Q96C00 473 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 NSUN4Q96CB9 384 aaKnown RBP6.75□□□□□ -1.33
HERC4-209ENST00000473533 ATP6V1G3Q96LB4 118 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 TANGO6Q9C0B7 1094 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 NYXQ9GZU5 481 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 NT5C3AQ9H0P0 336 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 NIP7Q9Y221 180 aaKnown RBP eCLIP6.75□□□□□ -1.33
HERC4-209ENST00000473533 DAAM1Q9Y4D1 1078 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 NHSL1Q5SYE7 1610 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 PHLPP1O60346 1717 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 GCOM1H8Y6P7 765 aaPredicted RBP6.75□□□□□ -1.33
HERC4-209ENST00000473533 STXBP3O00186 592 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 PDE2AO00408 941 aaPredicted RBP6.75□□□□□ -1.33
HERC4-209ENST00000473533 PPP1R37O75864 691 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 HEXIM1O94992 359 aaKnown RBP6.75□□□□□ -1.33
HERC4-209ENST00000473533 NTSR2O95665 410 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 MYZAPP0CAP1 466 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 FOXR1Q6PIV2 292 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 PRPF38AQ8NAV1 312 aaKnown RBP6.75□□□□□ -1.33
HERC4-209ENST00000473533 LARP4BQ92615 738 aaKnown RBP6.75□□□□□ -1.33
HERC4-209ENST00000473533 DIS3Q9Y2L1 958 aaKnown RBP6.75□□□□□ -1.33
HERC4-209ENST00000473533 SCN7AQ01118 1682 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 KIAA1551Q9HCM1 1747 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 CCNT1O60563 726 aaKnown RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 PLCG2P16885 1265 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 HIBADHP31937 336 aaKnown RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 PMS1P54277 932 aaKnown RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 EIF3BP55884 814 aaKnown RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 DYNLL1P63167 89 aaKnown RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 TFAP4Q01664 338 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 CYP27A1Q02318 531 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 NAB2Q15742 525 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 CDC37Q16543 378 aaPredicted RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 AGBL2Q5U5Z8 902 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 CCDC121Q6ZUS5 278 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 FBXO33Q7Z6M2 555 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 MYOCDQ8IZQ8 938 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 CCDC26Q8TAB7 109 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 WDR66Q8TBY9 1149 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 DDX17Q92841 729 aaKnown RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 CCDC43Q96MW1 224 aaKnown RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 CNOT10Q9H9A5 744 aaKnown RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 PLCB1Q9NQ66 1216 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 ARHGAP20Q9P2F6 1191 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 COL4A3BPQ9Y5P4 624 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 MYH1P12882 1939 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 FLT1P17948 1338 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 LRRC53A6NM62 1247 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 WNT7AO00755 349 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 CHUKO15111 745 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 ZNF185O15231 689 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 GCFC2P16383 781 aaKnown RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 GBP1P32455 592 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 HSPA9P38646 679 aaKnown RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 LIG3P49916 1009 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 ASIC2Q16515 512 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 MAATS1Q7Z4T9 603 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 SLF2Q8IX21 1173 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 CCDC65Q8IXS2 484 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 REXO1Q8N1G1 1221 aaKnown RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 ZIM3Q96PE6 472 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 NAP1L3Q99457 506 aaPredicted RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 TAF1DQ9H5J8 278 aaPredicted RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 MCM9Q9NXL9 1143 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 ATP6V0A2Q9Y487 856 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 PCDHGC5Q9Y5F6 944 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 CAPN6Q9Y6Q1 641 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 GRIN2DO15399 1336 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 CCDC88AQ3V6T2 1871 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 GFPT2O94808 682 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 FAM107AO95990 144 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 LSP1P33241 339 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 ATP6V1AP38606 617 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 MDH1P40925 334 aaKnown RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 MATR3P43243 847 aaKnown RBP eCLIP6.74□□□□□ -1.339e-6■■■■□ 23
HERC4-209ENST00000473533 RPS6KA1Q15418 735 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 SLC18A3Q16572 532 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 CALCRLQ16602 461 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 TXNRD1Q16881 649 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 LETM2Q2VYF4 491 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 ADGRA1Q86SQ6 560 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 IQCKQ8N0W5 287 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 DRC1Q96MC2 740 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 ISCUQ9H1K1 167 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 SLITRK6Q9H5Y7 841 aa6.74□□□□□ -1.33
HERC4-209ENST00000473533 FAM207AQ9NSI2 230 aaPredicted RBP6.74□□□□□ -1.33
HERC4-209ENST00000473533 PALM3A6NDB9 673 aaPredicted RBP6.73□□□□□ -1.33
HERC4-209ENST00000473533 RCCD1A6NED2 376 aa6.73□□□□□ -1.33
HERC4-209ENST00000473533 COBLO75128 1261 aa6.73□□□□□ -1.33
HERC4-209ENST00000473533 ZMYND10O75800 440 aa6.73□□□□□ -1.33
HERC4-209ENST00000473533 TRIM37O94972 964 aa6.73□□□□□ -1.33
HERC4-209ENST00000473533 CAMTA2O94983 1202 aa6.73□□□□□ -1.33
HERC4-209ENST00000473533 MYBL2P10244 700 aa6.73□□□□□ -1.33
HERC4-209ENST00000473533 MAP2K2P36507 400 aa6.73□□□□□ -1.33
HERC4-209ENST00000473533 GYG1P46976 350 aa6.73□□□□□ -1.33
HERC4-209ENST00000473533 MARSP56192 900 aaKnown RBP6.73□□□□□ -1.33
HERC4-209ENST00000473533 MECOMQ03112 1051 aa6.73□□□□□ -1.33
HERC4-209ENST00000473533 STK4Q13043 487 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms