RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	TRIP12	Q14669	1992 aa	Predicted RBP	13.29	□□□□□ -0.28
CPNE1-222	ENST00000473373	hCG_1642624	A0A1W2PR95	340 aa		13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	SORBS3	O60504	671 aa		13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	EIF3J	O75822	258 aa	Known RBP	13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	CAST	P20810	708 aa	Known RBP	13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	EDNRB	P24530	442 aa		13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	SMARCA1	P28370	1054 aa		13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	PSMC6	P62333	389 aa		13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	PGM5	Q15124	567 aa		13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	LY6K	Q17RY6	165 aa		13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	TMEM63B	Q5T3F8	832 aa		13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	APOA5	Q6Q788	366 aa		13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373		Q6ZUG5	572 aa		13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	SH3RF1	Q7Z6J0	888 aa		13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	SGMS1	Q86VZ5	419 aa		13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	SRBD1	Q8N5C6	995 aa	Known RBP	13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	PPP1R12C	Q9BZL4	782 aa		13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	NOD1	Q9Y239	953 aa		13.28	□□□□□ -0.28
CPNE1-222	ENST00000473373	RBM47	A0AV96	593 aa	Known RBP	13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	SPDYE3	A6NKU9	549 aa		13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	KPNA6	O60684	536 aa		13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	CPA1	P15085	419 aa		13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	HSPA4	P34932	840 aa		13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	METAP2	P50579	478 aa	Known RBP eCLIP	13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	AKAP17A	Q02040	695 aa	Known RBP	13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	SHH	Q15465	462 aa		13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	TSGA10IP	Q3SY00	556 aa		13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	GNPTAB	Q3T906	1256 aa		13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	ZNF697	Q5TEC3	545 aa		13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	CCSAP	Q6IQ19	270 aa	Predicted RBP	13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	TMTC3	Q6ZXV5	915 aa		13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	DHX37	Q8IY37	1157 aa	Known RBP	13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	TOX2	Q96NM4	488 aa		13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	PDCD2L	Q9BRP1	358 aa		13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	MTG1	Q9BT17	334 aa	Predicted RBP	13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	EHMT1	Q9H9B1	1298 aa		13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	SNX14	Q9Y5W7	946 aa		13.27	□□□□□ -0.29
CPNE1-222	ENST00000473373	CCDC196	A0A1B0GTZ2	297 aa		13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	TRIM43B	A6NCK2	446 aa		13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	NAPA	P54920	295 aa		13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	FPGS	Q05932	587 aa		13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	APOBR	Q0VD83	1088 aa		13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	FAAP100	Q0VG06	881 aa		13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	SLC35G1	Q2M3R5	365 aa		13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	KCNV1	Q6PIU1	500 aa		13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	ANKRD33	Q7Z3H0	272 aa		13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	BRF1	Q92994	677 aa		13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	TRIM43	Q96BQ3	446 aa	Predicted RBP	13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	ZFP91	Q96JP5	570 aa	Predicted RBP	13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	CDX2	Q99626	313 aa	Predicted RBP	13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	SEZ6L	Q9BYH1	1024 aa		13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	PSTPIP2	Q9H939	334 aa		13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	MLXIP	Q9HAP2	919 aa		13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	SCN10A	Q9Y5Y9	1956 aa		13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	UNC80	Q8N2C7	3258 aa		13.26	□□□□□ -0.29
CPNE1-222	ENST00000473373	NOP56	O00567	594 aa	Known RBP	13.25	□□□□□ -0.29
CPNE1-222	ENST00000473373	OPLAH	O14841	1288 aa		13.25	□□□□□ -0.29
CPNE1-222	ENST00000473373	CTAGE5	O15320	804 aa		13.25	□□□□□ -0.29
CPNE1-222	ENST00000473373	ARIH2	O95376	493 aa		13.25	□□□□□ -0.29
CPNE1-222	ENST00000473373	EXOSC10	Q01780	885 aa	Known RBP	13.25	□□□□□ -0.29
CPNE1-222	ENST00000473373	COL9A3	Q14050	684 aa	Predicted RBP	13.25	□□□□□ -0.29
CPNE1-222	ENST00000473373	DGKD	Q16760	1214 aa		13.25	□□□□□ -0.29
CPNE1-222	ENST00000473373	C9orf50	Q5SZB4	431 aa		13.25	□□□□□ -0.29
CPNE1-222	ENST00000473373	USP17L6P	Q6QN14	398 aa		13.25	□□□□□ -0.29
CPNE1-222	ENST00000473373	TMEM199	Q8N511	208 aa		13.25	□□□□□ -0.29
CPNE1-222	ENST00000473373	AFG1L	Q8WV93	481 aa		13.25	□□□□□ -0.29
CPNE1-222	ENST00000473373	BRPF3	Q9ULD4	1205 aa		13.25	□□□□□ -0.29
CPNE1-222	ENST00000473373	DNAH12	Q6ZR08	3092 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	CNTNAP5	Q8WYK1	1306 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	KIAA0355	O15063	1070 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	TIMP1	P01033	207 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	MMP3	P08254	477 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	SUPT20HL2	P0C7V6	817 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	RPS6KB1	P23443	525 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	NKX3-2	P78367	333 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	PURA	Q00577	322 aa	Known RBP	13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	PPIG	Q13427	754 aa	Known RBP eCLIP	13.24	□□□□□ -0.29	2e-13	■■□□□ 11.7
CPNE1-222	ENST00000473373	LAMC2	Q13753	1193 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	NLRX1	Q86UT6	975 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	FAM126B	Q8IXS8	530 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	IL31RA	Q8NI17	732 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	RNPC3	Q96LT9	517 aa	Known RBP	13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	SPATA33	Q96N06	139 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	ALG1	Q9BT22	464 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	SEMA6B	Q9H3T3	888 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	HIPK3	Q9H422	1215 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	RTEL1	Q9NZ71	1219 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	CYP46A1	Q9Y6A2	500 aa		13.24	□□□□□ -0.29
CPNE1-222	ENST00000473373	SCN5A	Q14524	2016 aa		13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373	B4GALT4	O60513	344 aa		13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373	EIF5B	O60841	1220 aa	Known RBP	13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373	STAM2	O75886	525 aa		13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373	GGPS1	O95749	300 aa		13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373	CDK7	P50613	346 aa		13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373	ADCY7	P51828	1080 aa		13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373	SP4	Q02446	784 aa		13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373	UBE2S	Q16763	222 aa		13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373	NBPF20	Q3BBV1	942 aa		13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373	CCDC62	Q6P9F0	684 aa		13.23	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 21 ms