RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 VCPKMTQ9H867 229 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 KIAA1468Q9P260 1216 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 SH3BP1Q9Y3L3 701 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 IPPQ9Y573 584 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 A0A0G2JND7 137 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 SLC26A4O43511 780 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 EPHB1P54762 984 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 UBE3AQ05086 875 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 PPIDQ08752 370 aaKnown RBP9.72□□□□□ -0.85
COL6A3-210ENST00000473258 CNGA2Q16280 664 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 THEMIS2Q5TEJ8 643 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 SFMBT2Q5VUG0 894 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 Q6ZUG5 572 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 ARL2BPQ9Y2Y0 163 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 C2orf54Q08AI8 447 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 ATP1A4Q13733 1029 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 SPARCL1Q14515 664 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 AKNAD1Q5T1N1 836 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 LMBRD2Q68DH5 695 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-210ENST00000473258 FRA10AC1Q70Z53 315 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 COG1Q8WTW3 980 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 ATP6V1G3Q96LB4 118 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 VIPAS39Q9H9C1 493 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 PTPDC1A2A3K4 754 aa9.71□□□□□ -0.85
COL6A3-210ENST00000473258 C16orf96A6NNT2 1141 aa9.71□□□□□ -0.85
COL6A3-210ENST00000473258 TSC22D2O75157 780 aa9.71□□□□□ -0.85
COL6A3-210ENST00000473258 RPN1P04843 607 aaKnown RBP9.71□□□□□ -0.85
COL6A3-210ENST00000473258 EPB41P11171 864 aaKnown RBP9.71□□□□□ -0.85
COL6A3-210ENST00000473258 CA4P22748 312 aa9.71□□□□□ -0.85
COL6A3-210ENST00000473258 CUL1Q13616 776 aa9.71□□□□□ -0.85
COL6A3-210ENST00000473258 ZNF554Q86TJ5 538 aa9.71□□□□□ -0.85
COL6A3-210ENST00000473258 MAML1Q92585 1016 aa9.71□□□□□ -0.85
COL6A3-210ENST00000473258 FAM192AQ9GZU8 254 aa9.71□□□□□ -0.85
COL6A3-210ENST00000473258 WBP11Q9Y2W2 641 aaKnown RBP9.71□□□□□ -0.85
COL6A3-210ENST00000473258 XPO1O14980 1071 aaKnown RBP9.71□□□□□ -0.85
COL6A3-210ENST00000473258 RAPGEF3O95398 923 aa9.71□□□□□ -0.85
COL6A3-210ENST00000473258 IRAK1P51617 712 aa9.71□□□□□ -0.85
COL6A3-210ENST00000473258 UBE3BQ7Z3V4 1068 aa9.71□□□□□ -0.85
COL6A3-210ENST00000473258 ZC3H15Q8WU90 426 aaKnown RBP9.71□□□□□ -0.85
COL6A3-210ENST00000473258 NOL6Q9H6R4 1146 aaKnown RBP9.71□□□□□ -0.85
COL6A3-210ENST00000473258 ATXN10Q9UBB4 475 aa9.71□□□□□ -0.85
COL6A3-210ENST00000473258 TRAF5O00463 557 aa9.71□□□□□ -0.86
COL6A3-210ENST00000473258 ATF2P15336 505 aa9.71□□□□□ -0.86
COL6A3-210ENST00000473258 RPL13P26373 211 aaKnown RBP9.71□□□□□ -0.86
COL6A3-210ENST00000473258 PPP6R3Q5H9R7 873 aaPredicted RBP9.71□□□□□ -0.86
COL6A3-210ENST00000473258 FAM173BQ6P4H8 233 aa9.71□□□□□ -0.86
COL6A3-210ENST00000473258 PARVAQ9NVD7 372 aa9.71□□□□□ -0.86
COL6A3-210ENST00000473258 DAPK2Q9UIK4 370 aa9.71□□□□□ -0.86
COL6A3-210ENST00000473258 FAM25AB3EWG3 89 aa9.71□□□□□ -0.86
COL6A3-210ENST00000473258 FAM25CB3EWG5 89 aa9.71□□□□□ -0.86
COL6A3-210ENST00000473258 FAM25GB3EWG6 89 aa9.71□□□□□ -0.86
COL6A3-210ENST00000473258 ZBTB43O43298 467 aa9.71□□□□□ -0.86
COL6A3-210ENST00000473258 KRT16P08779 473 aa9.71□□□□□ -0.86
COL6A3-210ENST00000473258 HMOX2P30519 316 aa9.71□□□□□ -0.86
COL6A3-210ENST00000473258 MDH1P40925 334 aaKnown RBP9.71□□□□□ -0.86
COL6A3-210ENST00000473258 PDE1AP54750 535 aa9.71□□□□□ -0.86
COL6A3-210ENST00000473258 PLTPP55058 493 aa9.71□□□□□ -0.86
COL6A3-210ENST00000473258 STK4Q13043 487 aa9.71□□□□□ -0.86
COL6A3-210ENST00000473258 FAM47EQ6ZV65 393 aa9.71□□□□□ -0.86
COL6A3-210ENST00000473258 SNTNA6NMZ2 147 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 CYTH3O43739 400 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 ATP6V1B1P15313 513 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 PGM1P36871 562 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 ABL2P42684 1182 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 SLC12A2P55011 1212 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 MAGOHP61326 146 aaKnown RBP9.7□□□□□ -0.86
COL6A3-210ENST00000473258 MAP3K10Q02779 954 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 CASC4Q6P4E1 433 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 MAGOHBQ96A72 148 aaKnown RBP9.7□□□□□ -0.86
COL6A3-210ENST00000473258 GGNBP2Q9H3C7 697 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 HACD3Q9P035 362 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 WDR37Q9Y2I8 494 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 FAM13AO94988 1023 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 INHBAP08476 426 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 NCF2P19878 526 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-210ENST00000473258 LAMC2Q13753 1193 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 TMED2Q15363 201 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 PLEKHA7Q6IQ23 1121 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 CRACR2BQ8N4Y2 399 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-210ENST00000473258 RETREG2Q8NC44 543 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 FMO2Q99518 471 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 PARVGQ9HBI0 331 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.7□□□□□ -0.86
COL6A3-210ENST00000473258 GALNT8Q9NY28 637 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 NFU1Q9UMS0 254 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 C2CD2Q9Y426 696 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 CBFA2T3O75081 653 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 MYBL1P10243 752 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 KCNA1Q09470 495 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 ANO1Q5XXA6 986 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 FAAH2Q6GMR7 532 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 RRAGAQ7L523 313 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 ZMYND12Q9H0C1 365 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 ZNF180Q9UJW8 692 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 KIF24Q5T7B8 1368 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 BUB1O43683 1085 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 MKRN3Q13064 507 aaKnown RBP9.7□□□□□ -0.86
COL6A3-210ENST00000473258 TRIM25Q14258 630 aaKnown RBP9.7□□□□□ -0.86
COL6A3-210ENST00000473258 ERMNQ8TAM6 284 aa9.7□□□□□ -0.86
COL6A3-210ENST00000473258 LRRC2Q9BYS8 371 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms